CABS-dock: f07c707270d7e85

Project name: f07c707270d7e85

Status: done

submitted: 2026-06-02 13:37:57, status changed: 2026-06-02 21:46:27

Project settings

Protein sequence(s)	MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPGHTMEVSC input pdb
Peptide sequence	SEAMEKLKALAE
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.7536	3.92742	34.2217	109
cluster_2.pdb ( medoid)	27.3256	4.79405	24.6948	131
cluster_3.pdb ( medoid)	25.3552	8.36119	34.3785	212
cluster_4.pdb ( medoid)	11.4847	10.3616	38.9804	119
cluster_5.pdb ( medoid)	10.1369	10.4568	34.6454	106
cluster_6.pdb ( medoid)	7.6579	12.7972	35.0924	98
cluster_7.pdb ( medoid)	5.9196	12.163	38.4774	72
cluster_8.pdb ( medoid)	5.84736	9.74799	28.871	57
cluster_9.pdb ( medoid)	5.01437	12.165	32.4459	61
cluster_10.pdb ( medoid)	1.71963	20.3532	42.7934	35