CABS-dock: f0b4f7d8ca2459c

Project name: f0b4f7d8ca2459c

Status: done

submitted: 2026-01-21 18:02:43, status changed: 2026-01-22 03:23:35

Project settings

Protein sequence(s)	PMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	IDNFKADDFGTMVRTNGGKQFDDMS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHCCEEECCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.5467	5.52095	24.5284	130
cluster_2.pdb ( medoid)	22.4531	4.14196	22.2172	93
cluster_3.pdb ( medoid)	22.3439	4.69928	19.4013	105
cluster_4.pdb ( medoid)	16.1399	11.834	27.5401	191
cluster_5.pdb ( medoid)	15.6205	7.74624	23.1323	121
cluster_6.pdb ( medoid)	8.28957	7.72054	18.0561	64
cluster_7.pdb ( medoid)	7.48743	13.2222	40.1993	99
cluster_8.pdb ( medoid)	5.09735	12.7517	24.5246	65
cluster_9.pdb ( medoid)	4.09063	17.8457	32.6745	73
cluster_10.pdb ( medoid)	3.81525	15.4642	29.1365	59