CABS-dock: f147260e725c10a

Project name: f147260e725c10a

Status: done

submitted: 2025-06-20 12:01:26, status changed: 2025-06-20 17:19:00

Project settings

Protein sequence(s)	GDRVADVIESSIGDSVSRALTHALPAPTGQNTQVSSHRLDTGKVPALQAAEIGASSNASDESMIETRCVLNSHSTAETTLDSFFSRAGLVGEIDLPLEGTTNPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL input pdb
Peptide sequence	LLFLKDHQY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.1008	4.82056	20.1953	121
cluster_2.pdb ( medoid)	16.9204	7.38755	29.7453	125
cluster_3.pdb ( medoid)	15.7189	9.22458	36.3589	145
cluster_4.pdb ( medoid)	14.3531	10.7991	31.346	155
cluster_5.pdb ( medoid)	8.54292	12.1738	26.6688	104
cluster_6.pdb ( medoid)	8.34433	13.3025	36.7293	111
cluster_7.pdb ( medoid)	6.39056	10.0148	23.2764	64
cluster_8.pdb ( medoid)	4.8225	14.3079	35.735	69
cluster_9.pdb ( medoid)	4.29719	13.4972	28.922	58
cluster_10.pdb ( medoid)	3.52158	13.6303	24.6887	48