CABS-dock: f18d156a28f4a2c

Project name: f18d156a28f4a2c

Status: done

submitted: 2025-12-26 06:30:59, status changed: 2025-12-27 01:13:38

Project settings

Protein sequence(s)	DHIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMLESLAIARYMAKKHHMMGETDEEYYNVEKLIGQVEDLEHEYHKTLMKPEEEKQKITKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSDRAGDHIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMLESLAIARYMAKKHHMMGETDEEYYNVEKLIGQVEDLEHEYHKTLMKPEEEKQKITKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSDRA input pdb
Peptide sequence	MLPVGRRAGNRDGKRMLRLHFA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.0342	4.6736	12.2714	117
cluster_2.pdb ( medoid)	23.0654	5.76621	54.7655	133
cluster_3.pdb ( medoid)	22.1996	5.22533	12.6391	116
cluster_4.pdb ( medoid)	15.2467	8.65761	53.9679	132
cluster_5.pdb ( medoid)	15.1527	7.19342	42.2142	109
cluster_6.pdb ( medoid)	7.87626	18.6637	50.4778	147
cluster_7.pdb ( medoid)	5.99949	19.5016	48.67	117
cluster_8.pdb ( medoid)	4.74628	10.5346	31.4466	50
cluster_9.pdb ( medoid)	2.32608	19.3458	39.8226	45
cluster_10.pdb ( medoid)	2.14221	15.8714	52.2465	34