CABS-dock: f1c432d4d539d6a

Project name: f1c432d4d539d6a

Status: done

submitted: 2026-03-12 14:59:27, status changed: 2026-03-12 18:35:10

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	RKWVQLFGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.5288	6.0811	25.81	137
cluster_2.pdb ( medoid)	21.9642	5.2358	23.2283	115
cluster_3.pdb ( medoid)	11.1356	10.0578	25.3396	112
cluster_4.pdb ( medoid)	10.9816	13.2038	29.5921	145
cluster_5.pdb ( medoid)	9.4369	8.05349	28.6199	76
cluster_6.pdb ( medoid)	7.42092	14.6882	34.9853	109
cluster_7.pdb ( medoid)	7.04681	12.0622	23.499	85
cluster_8.pdb ( medoid)	6.57705	13.684	29.0889	90
cluster_9.pdb ( medoid)	6.38631	11.5873	30.2015	74
cluster_10.pdb ( medoid)	4.13922	13.7707	29.2881	57