CABS-dock: f33b69198897532

Project name: f33b69198897532

Status: done

submitted: 2026-01-12 17:40:09, status changed: 2026-01-13 07:23:23

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	DKVVQLNANTHLKIDNFKADDFGTM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCCCCCCCCEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.808	2.55102	6.43305	99
cluster_2.pdb ( medoid)	31.7622	3.21137	14.3761	102
cluster_3.pdb ( medoid)	19.707	6.29217	27.0104	124
cluster_4.pdb ( medoid)	19.0517	5.77376	20.1559	110
cluster_5.pdb ( medoid)	10.1099	9.89127	23.2556	100
cluster_6.pdb ( medoid)	7.04225	9.79801	18.1039	69
cluster_7.pdb ( medoid)	6.36312	11.7867	24.604	75
cluster_8.pdb ( medoid)	5.42784	9.58024	19.5701	52
cluster_9.pdb ( medoid)	3.26575	11.9421	26.488	39
cluster_10.pdb ( medoid)	2.82303	10.6269	23.0208	30