CABS-dock: Fc-nature-20

Project name: Fc-nature-20

Status: done

submitted: 2026-05-08 07:27:27, status changed: 2026-05-08 11:43:11

Project settings

Protein sequence(s)	HMVHITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPL input pdb
Peptide sequence	ALHNH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.9889	1.45491	22.3408	64
cluster_2.pdb ( medoid)	36.6069	4.07027	17.729	149
cluster_3.pdb ( medoid)	27.9225	5.12131	26.7602	143
cluster_4.pdb ( medoid)	21.4923	5.62994	30.2572	121
cluster_5.pdb ( medoid)	19.6055	10.8643	41.4431	213
cluster_6.pdb ( medoid)	11.8643	3.87719	8.81589	46
cluster_7.pdb ( medoid)	10.5631	5.11213	32.0987	54
cluster_8.pdb ( medoid)	8.69984	7.12656	26.3077	62
cluster_9.pdb ( medoid)	6.35853	11.0088	36.4522	70
cluster_10.pdb ( medoid)	6.0012	12.9974	29.609	78