CABS-dock: f3b66b4c0493de8

Project name: f3b66b4c0493de8

Status: done

submitted: 2026-01-13 16:33:02, status changed: 2026-01-14 05:08:26

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	VEDLITVKGEGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.1537	4.51277	36.5334	109
cluster_2.pdb ( medoid)	23.5182	6.76072	33.0674	159
cluster_3.pdb ( medoid)	12.7068	11.8834	26.2998	151
cluster_4.pdb ( medoid)	9.48035	7.70014	32.5577	73
cluster_5.pdb ( medoid)	8.45885	12.1766	47.1914	103
cluster_6.pdb ( medoid)	7.10219	11.8273	39.5605	84
cluster_7.pdb ( medoid)	6.93703	14.2712	30.5704	99
cluster_8.pdb ( medoid)	6.7852	11.643	39.7373	79
cluster_9.pdb ( medoid)	6.39308	12.5135	29.649	80
cluster_10.pdb ( medoid)	4.49407	14.0185	28.0824	63