CABS-dock: f4ec90ab937916b

Project name: f4ec90ab937916b

Status: done

submitted: 2025-08-01 13:19:11, status changed: 2025-08-01 13:32:07

Project settings

Protein sequence(s)	VNITIKQHTVTTTTKG input pdb
Peptide sequence	KSPLY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.4852	4.65705	15.5223	128
cluster_2.pdb ( medoid)	21.3151	4.59767	20.1629	98
cluster_3.pdb ( medoid)	21.0697	5.69539	29.85	120
cluster_4.pdb ( medoid)	15.6049	6.2801	22.9458	98
cluster_5.pdb ( medoid)	13.0694	9.64087	27.6808	126
cluster_6.pdb ( medoid)	12.7168	10.8518	27.9738	138
cluster_7.pdb ( medoid)	12.6339	5.61978	19.677	71
cluster_8.pdb ( medoid)	7.64373	10.3353	27.6439	79
cluster_9.pdb ( medoid)	7.02958	7.68183	27.6517	54
cluster_10.pdb ( medoid)	4.56782	12.0408	30.8887	55