CABS-dock: 7T5M_YTAVSS

Project name: 7T5M_YTAVSS_E2

Status: done

submitted: 2026-05-30 16:12:22, status changed: 2026-05-31 14:41:53

Project settings

Protein sequence(s)	GSSHSSMMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRRFDSDAASQRMEEPRAPWIEQEGPPEYWDGETRRKVKAHSQTHRVDLGTLLRGYYNQSEAGSHTVQRMYGCDVVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHHHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKKETLQRTTDAPKKTHMMTHHAVSDHEATLRCWALSFYPPAEITLTWQRDGEDDQTQDTELVETRPAGDGTFQKWAAVVVPSSSGQEQRYTCHVQHEGLPKPLTLRWEP input pdb
Peptide sequence	YTAVSSTWHWTGHNVKH
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	49.575	2.62229	10.2363	130
cluster_2.pdb ( medoid)	29.4936	4.10259	24.6309	121
cluster_3.pdb ( medoid)	28.6875	4.56645	10.6641	131
cluster_4.pdb ( medoid)	22.4373	4.23402	11.8979	95
cluster_5.pdb ( medoid)	22.4141	7.62911	39.5508	171
cluster_6.pdb ( medoid)	19.6037	5.86625	15.0822	115
cluster_7.pdb ( medoid)	9.79481	12.1493	35.3946	119
cluster_8.pdb ( medoid)	3.9992	10.7521	22.0631	43
cluster_9.pdb ( medoid)	3.81884	9.68881	19.8831	37
cluster_10.pdb ( medoid)	3.75352	10.1238	19.8259	38