CABS-dock: primed p11

Project name: primed p11

Status: done

submitted: 2025-05-09 14:40:33, status changed: 2025-05-09 19:44:15

Project settings

Protein sequence(s)	TPIATFVSGSPSLNTYNATTVNSSANAFSCAYYLQQWNIQGLLVTSLYLKLDSATMGNRPGDLNSANAKWFTFWVSAYLQQCNPSGIQAGTVSPSTATLTDFEPMANRSVTSPWTYSANGYYEPSIGEFQVFSPVVTGAWNPGNIGIRVLPVPVSASGERYTLLCYSLQCTNASIFNPNNSGTMIVGPVLYSCPAASLP input pdb
Peptide sequence	WWHLPV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.335	2.64556	15.8693	112
cluster_2.pdb ( medoid)	35.3083	2.37904	12.9476	84
cluster_3.pdb ( medoid)	24.912	8.10855	35.2858	202
cluster_4.pdb ( medoid)	20.2988	7.09401	21.4469	144
cluster_5.pdb ( medoid)	11.1958	7.50285	22.6595	84
cluster_6.pdb ( medoid)	11.1697	8.14705	16.5177	91
cluster_7.pdb ( medoid)	9.71074	11.9455	35.1821	116
cluster_8.pdb ( medoid)	9.32907	4.50206	15.9865	42
cluster_9.pdb ( medoid)	6.39277	12.3577	31.4672	79
cluster_10.pdb ( medoid)	5.38911	8.53573	28.6924	46