CABS-dock: 6qkf

Project name: 6qkf

Status: done

submitted: 2025-12-12 16:19:05, status changed: 2025-12-12 17:45:52

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	RGGRLCYCRGWICFCVGR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEECCEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.3013	6.52325	24.5183	152
cluster_2.pdb ( medoid)	20.1716	5.84982	25.6892	118
cluster_3.pdb ( medoid)	19.5908	5.71697	25.6625	112
cluster_4.pdb ( medoid)	18.5894	7.31599	22.1963	136
cluster_5.pdb ( medoid)	18.1501	4.1873	18.38	76
cluster_6.pdb ( medoid)	15.9981	7.8134	26.1017	125
cluster_7.pdb ( medoid)	9.57117	9.19428	23.0987	88
cluster_8.pdb ( medoid)	5.8431	14.2048	28.3803	83
cluster_9.pdb ( medoid)	4.01916	14.4309	28.1007	58
cluster_10.pdb ( medoid)	3.62036	14.3632	31.9824	52