CABS-dock: HTL_Q8RGZ4

Project name: HTL_Q8RGZ4_3rd

Status: done

submitted: 2025-08-01 20:47:24, status changed: 2025-08-02 04:57:16

Project settings

Protein sequence(s)	KEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEEIMTKRSNYTPITNVPPEVTVLLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREEDHLFRKFHYLPFLPSTEDVYDCRVVEHWGLDEPLLKHWEFDTRPRFLEQVVKHECHFFNGTERVRFLDRYFYHQQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPPLQHHNLLLVCSVNGFYPGSSIEVRWFRNGQEEKTGVVSSTGLIIQNGDWTFQTLVMMLETVPRSGEVYTCQQVEHPSLTSPLLTVEWRASSAD input pdb
Peptide sequence	SVGGYHRTGNIQGDK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.5955	3.57646	24.0698	113
cluster_2.pdb ( medoid)	28.4308	6.82358	15.9082	194
cluster_3.pdb ( medoid)	25.5877	5.4323	14.8834	139
cluster_4.pdb ( medoid)	21.9986	4.81848	31.836	106
cluster_5.pdb ( medoid)	21.283	5.07447	19.9338	108
cluster_6.pdb ( medoid)	9.76297	7.68209	19.733	75
cluster_7.pdb ( medoid)	7.31208	11.6246	24.5112	85
cluster_8.pdb ( medoid)	7.20247	12.3569	32.2868	89
cluster_9.pdb ( medoid)	5.06178	9.68039	30.3063	49
cluster_10.pdb ( medoid)	3.43437	12.2293	22.0909	42