CABS-dock: f64b9dedc49e943

Project name: f64b9dedc49e943

Status: done

submitted: 2026-03-08 14:17:57, status changed: 2026-03-08 20:24:27

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	VQVFGLNNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.3653	2.92863	14.46	86
cluster_2.pdb ( medoid)	26.9864	3.89085	26.753	105
cluster_3.pdb ( medoid)	19.6969	6.39694	21.1148	126
cluster_4.pdb ( medoid)	15.6291	10.2373	41.5678	160
cluster_5.pdb ( medoid)	14.3048	7.96933	19.9762	114
cluster_6.pdb ( medoid)	9.37732	7.6781	19.7815	72
cluster_7.pdb ( medoid)	6.6001	11.515	24.7088	76
cluster_8.pdb ( medoid)	4.17626	16.7614	40.7274	70
cluster_9.pdb ( medoid)	3.06629	12.719	30.42	39
cluster_10.pdb ( medoid)	2.86274	18.1644	46.1785	52