CABS-dock: f678de54cc443cf

Project name: f678de54cc443cf

Status: done

submitted: 2026-01-12 09:19:18, status changed: 2026-01-12 11:48:50

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	DIHMEQSILRRVQLGHSNEMRLHGV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHHCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.5056	1.96169	15.7606	103
cluster_2.pdb ( medoid)	34.701	2.50713	4.3122	87
cluster_3.pdb ( medoid)	30.6524	2.41416	4.30903	74
cluster_4.pdb ( medoid)	20.506	7.21739	27.5466	148
cluster_5.pdb ( medoid)	15.2188	6.308	21.2917	96
cluster_6.pdb ( medoid)	14.0932	11.0692	28.0014	156
cluster_7.pdb ( medoid)	12.007	10.827	22.189	130
cluster_8.pdb ( medoid)	11.9838	3.25438	6.28214	39
cluster_9.pdb ( medoid)	11.5133	9.03305	32.6149	104
cluster_10.pdb ( medoid)	6.93066	9.09004	23.5905	63