CABS-dock: f7a89e92af76cac

Project name: f7a89e92af76cac

Status: done

submitted: 2025-07-02 06:12:30, status changed: 2025-07-02 18:51:55

Project settings

Protein sequence(s)	GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM input pdb
Peptide sequence	RSIRARLLL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.0474	2.50886	11.9807	108
cluster_2.pdb ( medoid)	34.5101	3.24542	30.1227	112
cluster_3.pdb ( medoid)	29.7906	6.57925	17.5255	196
cluster_4.pdb ( medoid)	23.8842	4.01939	18.4816	96
cluster_5.pdb ( medoid)	17.2033	7.26605	33.7849	125
cluster_6.pdb ( medoid)	15.25	8.39345	30.9261	128
cluster_7.pdb ( medoid)	12.0752	5.38292	12.9623	65
cluster_8.pdb ( medoid)	10.7485	3.62842	9.59318	39
cluster_9.pdb ( medoid)	10.0925	6.93583	34.1707	70
cluster_10.pdb ( medoid)	7.10579	8.58455	18.8504	61