CABS-dock: f7b55f2513ee2fd

Project name: f7b55f2513ee2fd

Status: done

submitted: 2026-06-23 20:15:19, status changed: 2026-06-24 07:17:21

Project settings

Protein sequence(s)	QNCSGPCRCPDEPAPRCPAGVSLVLDGCGCCRVCAKQLGELCTERDPCDPHKGLFCHFGSPANRKIGVCTAKDGAPCIFGGTVYRSGESFQSSCKYQCTCLDGAVGCMPLCSMDVRLPSPDCPFPRRVKLPGKCCEEWVCDEPKDQTVVGPALAAYRLEDTFGPDPTMIRANCLVQTTEWSACSKTCGMGISTRVTNDNASCRLEKQSRLCMVRPCEADLEENIKKGKKCIRTPKISKPIKFELSGCTSMKTYRAKFCGVCTDGRCCTPHRTTTLPVEFKCPDGEVMKKNMMFIKTCACHYNCPGDNDIFESLYYRKMYGDMA input pdb
Peptide sequence	QYWEIQPSTFRCVYVRSAIQLGNYK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEEEEEECCEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.4794	1.86988	3.83765	100
cluster_2.pdb ( medoid)	32.8853	3.1321	11.6837	103
cluster_3.pdb ( medoid)	18.6727	3.58813	7.09965	67
cluster_4.pdb ( medoid)	16.0878	6.34022	34.341	102
cluster_5.pdb ( medoid)	10.7169	8.86452	23.2188	95
cluster_6.pdb ( medoid)	8.46827	11.6907	38.5166	99
cluster_7.pdb ( medoid)	6.08229	5.09677	10.1152	31
cluster_8.pdb ( medoid)	3.88647	13.1224	29.585	51
cluster_9.pdb ( medoid)	2.41117	15.3452	34.5626	37
cluster_10.pdb ( medoid)	1.91624	12.5245	37.0265	24