CABS-dock: fa4cc79b9e4821c

Project name: fa4cc79b9e4821c

Status: done

submitted: 2026-07-22 04:55:32, status changed: 2026-07-22 07:34:45

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	VQCGSNCRRVIRRV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.0707	12.0079	35.6151	229
cluster_2.pdb ( medoid)	18.8646	8.00443	26.2728	151
cluster_3.pdb ( medoid)	16.8788	6.33933	30.261	107
cluster_4.pdb ( medoid)	12.3444	5.75161	21.4753	71
cluster_5.pdb ( medoid)	11.7945	5.6806	25.1692	67
cluster_6.pdb ( medoid)	7.16918	12.5537	25.3262	90
cluster_7.pdb ( medoid)	6.2726	9.56541	22.9082	60
cluster_8.pdb ( medoid)	6.03784	14.5747	26.4569	88
cluster_9.pdb ( medoid)	3.94315	19.0203	41.4161	75
cluster_10.pdb ( medoid)	3.55467	17.4419	38.6056	62