Project name: RING1wt

Status: done

submitted: 2026-07-23 14:10:08, status changed: 2026-07-23 21:41:10
Project settings
Protein sequence(s) PWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRNRGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSAQQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNKTLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLEEKVCSLLEPLGLQCTFINDFFTYHIRHGEVHCGTNVRRKPFSFKWWNMVP input pdb
Peptide sequence DGASEIELVFRPHPTLMEKD
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCCCCCCC
Contact information
645:A 11:PEP 5.0 1.0
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 44.0753 4.26542 11.7062 188
cluster_2.pdb ( medoid) 43.5941 3.80786 8.86694 166
cluster_3.pdb ( medoid) 29.7053 3.80404 8.38643 113
cluster_4.pdb ( medoid) 27.1396 4.42158 13.9635 120
cluster_5.pdb ( medoid) 21.7156 4.74314 18.8466 103
cluster_6.pdb ( medoid) 11.8629 5.05777 11.4384 60
cluster_7.pdb ( medoid) 11.8174 9.64683 19.0438 114
cluster_8.pdb ( medoid) 6.90938 7.38127 19.2351 51
cluster_9.pdb ( medoid) 5.61796 6.58602 16.314 37
cluster_10.pdb ( medoid) 4.80694 9.98556 22.0224 48

 
Laboratory of Computational Biology, 2020