CABS-dock: eNOS-NMT2

Project name: eNOS-NMT2

Status: done

submitted: 2025-12-31 08:41:36, status changed: 2025-12-31 16:03:23

Project settings

Protein sequence(s)	GFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ input pdb
Peptide sequence	MGNLKSVGQEPGPPCGLGLG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.9349	1.908	27.0134	101
cluster_2.pdb ( medoid)	20.4262	4.01446	20.2335	82
cluster_3.pdb ( medoid)	18.9504	8.70692	27.7566	165
cluster_4.pdb ( medoid)	12.9586	7.56257	22.1349	98
cluster_5.pdb ( medoid)	11.0921	10.6382	26.0801	118
cluster_6.pdb ( medoid)	9.82337	9.46722	33.6599	93
cluster_7.pdb ( medoid)	9.19869	10.1101	30.6338	93
cluster_8.pdb ( medoid)	8.5347	9.3735	22.6406	80
cluster_9.pdb ( medoid)	7.91639	9.72666	24.5492	77
cluster_10.pdb ( medoid)	7.68462	12.1021	34.7419	93