CABS-dock: K1.3

Project name: K1.3_USP7

Status: done

submitted: 2026-01-12 05:26:39, status changed: 2026-01-12 09:23:33

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWGARAHSS input pdb
Peptide sequence	SGTSPSSRSNTLPRSNTSSGASPPADAS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	15.268	8.51455	36.2686	130
cluster_2.pdb ( medoid)	14.4733	5.45833	30.2392	79
cluster_3.pdb ( medoid)	13.5081	8.51341	34.1259	115
cluster_4.pdb ( medoid)	11.6575	9.35017	42.7499	109
cluster_5.pdb ( medoid)	9.17674	11.442	33.934	105
cluster_6.pdb ( medoid)	8.84703	13.2248	40.8757	117
cluster_7.pdb ( medoid)	7.90301	14.931	30.8739	118
cluster_8.pdb ( medoid)	7.01301	7.98516	36.4772	56
cluster_9.pdb ( medoid)	5.11976	17.5789	33.6423	90
cluster_10.pdb ( medoid)	4.54929	17.805	34.0588	81