CABS-dock: ActivinA_Design

Project name: ActivinA_Design_1

Status: done

submitted: 2026-02-20 15:25:08, status changed: 2026-02-20 17:23:12

Project settings

Protein sequence(s)	RECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLP input pdb
Peptide sequence	SAAAELAALNKAREAAVRAS
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.3485	5.31083	19.4814	124
cluster_2.pdb ( medoid)	22.1318	6.46129	19.0278	143
cluster_3.pdb ( medoid)	19.0267	9.03993	32.4294	172
cluster_4.pdb ( medoid)	14.4644	4.83947	13.0365	70
cluster_5.pdb ( medoid)	14.4275	12.0603	24.4177	174
cluster_6.pdb ( medoid)	12.4539	6.58429	16.1296	82
cluster_7.pdb ( medoid)	9.02	6.09756	20.4834	55
cluster_8.pdb ( medoid)	8.10662	8.38821	17.0892	68
cluster_9.pdb ( medoid)	7.95224	7.04204	15.3642	56
cluster_10.pdb ( medoid)	4.371	12.8117	29.4067	56