CABS-dock: fd27f8739aa8813

Project name: fd27f8739aa8813

Status: done

submitted: 2026-07-27 18:22:00, status changed: 2026-07-27 23:28:24

Project settings

Protein sequence(s)	VGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM input pdb
Peptide sequence	INPEIITRDGFLLLQMDFGF
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHCCCCCEEEEEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.2698	6.12357	33.2884	118
cluster_2.pdb ( medoid)	17.1039	6.89903	14.9212	118
cluster_3.pdb ( medoid)	15.0823	5.96724	18.7362	90
cluster_4.pdb ( medoid)	14.2967	10.4919	37.6239	150
cluster_5.pdb ( medoid)	12.9659	9.1008	25.8976	118
cluster_6.pdb ( medoid)	11.9219	5.70381	21.7938	68
cluster_7.pdb ( medoid)	8.4658	13.8203	28.8718	117
cluster_8.pdb ( medoid)	7.66864	12.6489	26.2817	97
cluster_9.pdb ( medoid)	5.81644	11.0033	23.9831	64
cluster_10.pdb ( medoid)	5.80271	10.34	27.7384	60