CABS-dock: DRAMP00882M

Project name: DRAMP00882M

Status: done

submitted: 2024-07-25 15:37:08, status changed: 2024-07-25 22:23:27

Project settings

Protein sequence(s)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMVLPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ input pdb

Peptide sequence

KVCYRAIPCGESCVWIPCISAAIGCSCKN

Simulation mc cycles

Peptide secondary structure psipred

CCCCCCCCCCCCEEEHHEHHHHHCCCCCC

Contact information

163:A 1:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.3164	4.20992	23.6478	115
cluster_2.pdb ( medoid)	22.4235	5.21774	22.459	117
cluster_3.pdb ( medoid)	21.2206	5.51351	15.7925	117
cluster_4.pdb ( medoid)	14.4191	7.76748	23.1397	112
cluster_5.pdb ( medoid)	12.8133	9.36524	30.8176	120
cluster_6.pdb ( medoid)	12.0311	8.31179	17.0323	100
cluster_7.pdb ( medoid)	9.9266	8.86507	18.2744	88
cluster_8.pdb ( medoid)	6.94133	10.2286	31.0613	71
cluster_9.pdb ( medoid)	6.6682	11.9972	30.4492	80
cluster_10.pdb ( medoid)	6.35038	12.5977	24.9543	80