CABS-dock: glp1r

Project name: glp1r

Status: done

submitted: 2026-06-24 04:22:42, status changed: 2026-06-24 12:40:16

Project settings

Protein sequence(s)	TRVFKKSSPNGKLTVYLGKRDFVDHLDKVDPVDGVVLVDPDYLKDRKVFVTLTVAFRYGREDCDVLGLSFRKDLFIANYQAFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLPSSVTLQPGPEDTGKALGVDFEIRAFVAKSLEEKSHKRNSVRLVIRKVQFAPEKPGPQPSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADIVLFSTAQYKVPVAQVEQDDQVSPSSTFSKVYTITPFLANNREKRGLALDGKLKHEDTNLASSTIVKEGANKEVLGILVSYRVKVKLVVSRGGDVSVELPFVLMHPKPH input pdb
Peptide sequence	KCPEDDLDDGATAGDDMYEA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHCCCCCCCCHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.3399	4.94902	16.5481	165
cluster_2.pdb ( medoid)	31.883	3.85785	13.9257	123
cluster_3.pdb ( medoid)	21.8754	4.84561	10.6025	106
cluster_4.pdb ( medoid)	15.9804	5.50676	18.808	88
cluster_5.pdb ( medoid)	15.5738	8.66841	19.0544	135
cluster_6.pdb ( medoid)	7.79471	18.2175	45.4485	142
cluster_7.pdb ( medoid)	7.4644	14.0668	32.323	105
cluster_8.pdb ( medoid)	5.92147	6.75508	14.1507	40
cluster_9.pdb ( medoid)	4.14477	14.2348	39.8597	59
cluster_10.pdb ( medoid)	2.66672	13.8747	34.1079	37