CABS-dock: dimer

Project name: dimer

Status: done

submitted: 2026-06-17 01:53:09, status changed: 2026-06-17 10:06:03

Project settings

Protein sequence(s)	NCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCNQTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLFRERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRGGLDLRVRGEPLQVERTLIYYLDEIPPKFNCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCNQTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLFRERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRGGLDLRVRGEPLQVERTLIYYLDEIPPKF input pdb
Peptide sequence	SGMTWDIATIL
Simulation mc cycles	20
Peptide secondary structure psipred	CCCCCCCHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	111.567	0.304751	2.07626	34
cluster_2.pdb ( medoid)	36.8042	2.71708	7.7185	100
cluster_3.pdb ( medoid)	24.6303	1.62402	29.8464	40
cluster_4.pdb ( medoid)	21.6177	7.86393	30.6358	170
cluster_5.pdb ( medoid)	21.472	8.4296	30.0253	181
cluster_6.pdb ( medoid)	16.7385	6.09374	32.7162	102
cluster_7.pdb ( medoid)	13.4111	10.29	23.3369	138
cluster_8.pdb ( medoid)	8.45127	15.3823	35.0582	130
cluster_9.pdb ( medoid)	5.86487	5.96774	16.9669	35
cluster_10.pdb ( medoid)	4.83341	14.4825	39.3381	70