CABS-dock: fd91bdfc95df9c3

Project name: fd91bdfc95df9c3

Status: done

submitted: 2026-03-18 12:34:14, status changed: 2026-03-18 22:07:05

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	RHPRPRLSFMAIPPKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	41.8892	2.69759	12.393	113
cluster_2.pdb ( medoid)	25.7073	4.97914	22.303	128
cluster_3.pdb ( medoid)	25.3531	5.28536	19.6074	134
cluster_4.pdb ( medoid)	24.5585	7.37016	22.3813	181
cluster_5.pdb ( medoid)	13.797	10.1471	29.5356	140
cluster_6.pdb ( medoid)	6.46667	19.4845	43.5927	126
cluster_7.pdb ( medoid)	3.07814	12.0202	25.6707	37
cluster_8.pdb ( medoid)	2.9507	20.6731	42.1407	61
cluster_9.pdb ( medoid)	2.49119	18.8665	36.4916	47
cluster_10.pdb ( medoid)	2.47174	13.3509	30.2785	33