CABS-dock: fdfda48dae8bfd6

Project name: fdfda48dae8bfd6

Status: done

submitted: 2026-03-08 14:14:01, status changed: 2026-03-08 16:52:24

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	VQVFGDNNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.1268	5.70765	22.1614	132
cluster_2.pdb ( medoid)	22.3443	6.48936	33.506	145
cluster_3.pdb ( medoid)	11.5227	11.8896	29.0992	137
cluster_4.pdb ( medoid)	11.3244	8.74215	27.1974	99
cluster_5.pdb ( medoid)	8.71885	10.6665	23.0501	93
cluster_6.pdb ( medoid)	8.53497	12.8882	27.2059	110
cluster_7.pdb ( medoid)	7.78559	10.5323	23.1371	82
cluster_8.pdb ( medoid)	7.53285	9.69089	26.1941	73
cluster_9.pdb ( medoid)	5.65629	11.4916	36.2273	65
cluster_10.pdb ( medoid)	5.37361	11.9101	24.3621	64