CABS-dock: ff1dbcac11426be

Project name: ff1dbcac11426be

Status: done

submitted: 2026-03-23 02:01:51, status changed: 2026-03-23 05:00:48

Project settings

Protein sequence(s)	FRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDSPET input pdb
Peptide sequence	RHWARNP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.5822	5.31621	23.9776	136
cluster_2.pdb ( medoid)	21.6067	7.08115	34.2394	153
cluster_3.pdb ( medoid)	21.468	4.65809	12.0961	100
cluster_4.pdb ( medoid)	20.0837	5.07875	20.2955	102
cluster_5.pdb ( medoid)	15.7686	7.29299	27.4878	115
cluster_6.pdb ( medoid)	15.2728	8.57735	28.7118	131
cluster_7.pdb ( medoid)	14.7471	6.71318	34.1926	99
cluster_8.pdb ( medoid)	10.4754	6.20499	17.1264	65
cluster_9.pdb ( medoid)	8.47092	5.66645	11.9485	48
cluster_10.pdb ( medoid)	7.10004	7.18306	24.644	51