CABS-dock: ActivinA_Design

Project name: ActivinA_Design_6

Status: done

submitted: 2026-02-20 15:31:04, status changed: 2026-02-20 17:28:50

Project settings

Protein sequence(s)	RECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLP input pdb
Peptide sequence	SAAAELRALNDARLAAQRAK
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.9832	5.78047	27.2104	208
cluster_2.pdb ( medoid)	24.6692	4.45901	26.5948	110
cluster_3.pdb ( medoid)	19.5156	7.83988	27.7212	153
cluster_4.pdb ( medoid)	16.0503	7.35189	17.8703	118
cluster_5.pdb ( medoid)	11.6559	8.15034	15.1237	95
cluster_6.pdb ( medoid)	11.5076	7.3864	19.7116	85
cluster_7.pdb ( medoid)	11.1673	9.13383	19.6362	102
cluster_8.pdb ( medoid)	8.37872	9.18995	20.3743	77
cluster_9.pdb ( medoid)	6.88733	5.22699	11.2674	36
cluster_10.pdb ( medoid)	1.49381	10.7109	21.6972	16