CABS-dock: ff2a6533e492b5c

Project name: ff2a6533e492b5c

Status: done

submitted: 2026-02-26 17:22:33, status changed: 2026-02-26 23:55:39

Project settings

Protein sequence(s)	MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLGFLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEEGIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALNDRVYIGKRYHYDIRLPNFYQMSTPEIRRSPLTQHFQNSRRYCDK input pdb
Peptide sequence	KQWLALYKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.8091	3.32113	9.26533	99
cluster_2.pdb ( medoid)	25.5231	5.48523	19.1093	140
cluster_3.pdb ( medoid)	22.1933	6.03786	32.2949	134
cluster_4.pdb ( medoid)	21.6527	1.66261	7.20306	36
cluster_5.pdb ( medoid)	15.8451	3.53422	13.4053	56
cluster_6.pdb ( medoid)	11.6918	8.03979	24.808	94
cluster_7.pdb ( medoid)	10.6453	6.29383	12.2775	67
cluster_8.pdb ( medoid)	10.4864	8.10573	32.8773	85
cluster_9.pdb ( medoid)	8.27463	5.19661	22.5836	43
cluster_10.pdb ( medoid)	5.19174	8.86022	19.9135	46