CABS-dock: ff71a225ae043a1

Project name: ff71a225ae043a1

Status: done

submitted: 2026-03-12 12:28:36, status changed: 2026-03-12 15:11:44

Project settings

Protein sequence(s)	QVQLVESGGGLAQAGGSLQLSCAASGSTSRVNAMGWYRQTPGKERELVAAIDRSGATVYSESVRGRFTISKNDAKDIVWLQMNNLTTEDTAVYYCRSGVLGSWGLGTQVTVSS input pdb
Peptide sequence	LKKTETQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.2232	3.88283	14.9597	129
cluster_2.pdb ( medoid)	22.3552	6.08359	23.8194	136
cluster_3.pdb ( medoid)	21.6044	6.75788	18.2072	146
cluster_4.pdb ( medoid)	17.9493	7.46549	30.598	134
cluster_5.pdb ( medoid)	17.9188	6.47366	15.8403	116
cluster_6.pdb ( medoid)	11.1014	9.45823	26.1316	105
cluster_7.pdb ( medoid)	9.65006	7.04658	17.3785	68
cluster_8.pdb ( medoid)	7.73603	11.8924	28.4568	92
cluster_9.pdb ( medoid)	6.25187	5.75827	19.0483	36
cluster_10.pdb ( medoid)	3.28507	11.5675	28.4324	38