CABS-dock: ff87eff0085f5f1

Project name: ff87eff0085f5f1

Status: done

submitted: 2025-06-21 09:20:54, status changed: 2025-06-21 15:30:19

Project settings

Protein sequence(s)	MGAMAPRTLLLLLAAALAPTQTRAGPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA input pdb
Peptide sequence	PPPPPPPPP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.0492	2.25605	4.45108	52
cluster_2.pdb ( medoid)	21.0325	2.80518	15.1126	59
cluster_3.pdb ( medoid)	14.3496	7.45666	18.9888	107
cluster_4.pdb ( medoid)	12.752	0.862613	1.37778	11
cluster_5.pdb ( medoid)	12.4551	4.01441	18.9456	50
cluster_6.pdb ( medoid)	11.5379	8.14705	23.0867	94
cluster_7.pdb ( medoid)	9.20991	4.45173	23.0093	41
cluster_8.pdb ( medoid)	7.249	6.34571	16.737	46
cluster_9.pdb ( medoid)	4.35293	8.04056	16.9459	35
cluster_10.pdb ( medoid)	2.79031	12.185	29.5658	34