CABS-dock: ffa606c9ca39378

Project name: ffa606c9ca39378

Status: done

submitted: 2025-12-14 08:05:01, status changed: 2025-12-14 13:22:50

Project settings

Protein sequence(s)	GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN input pdb
Peptide sequence	DDPK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.8895	6.64795	30.2103	212
cluster_2.pdb ( medoid)	30.5719	8.14472	36.2043	249
cluster_3.pdb ( medoid)	21.061	2.46902	27.2481	52
cluster_4.pdb ( medoid)	13.8332	6.28922	29.6778	87
cluster_5.pdb ( medoid)	10.79	12.4189	32.5778	134
cluster_6.pdb ( medoid)	9.02861	4.43036	19.5829	40
cluster_7.pdb ( medoid)	7.08978	7.75765	27.2119	55
cluster_8.pdb ( medoid)	6.17226	5.67053	18.4477	35
cluster_9.pdb ( medoid)	6.16343	12.1686	37.5506	75
cluster_10.pdb ( medoid)	4.8065	12.6912	32.0615	61