Project name: Mutant_aggregation

Status: done

submitted: 2018-12-11 16:33:21, status changed: 2018-12-11 16:45:36
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Chain sequence(s) A: PVDRSLLKLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGPKPYSPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFRNLESTRCLLAGLFQCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQRTRGRRQTASLQPGISEDLKKVKDRMGIDSSDKVDFFILLDNVAAEQAHNLPSCPMLKRFARMIEQRAVDTSLYILPKEDRESLQMAVGPFLHILESNLLKAMDSATAPDKIRKLYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKEQVPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQT
Distance of aggregation 5 Å
Dynamic mode No
Mutated residues IA325V
Energy difference between WT (input) and mutated protein (by FoldX) 0.435207 kcal/mol

Changes in protein stability upon mutation are calculated using the FoldX forcefield. Computational prediction of protein stability is used with the intention of preventing the experimental characterization of proteins bearing mutations that significantly destabilize their structure. Mutations resulting in a predicted reduction in protein stability ≥ 1 kcal/mol are considered disruptive.

Show buried residues

Minimal score value
-2.2489
Maximal score value
1.7349
Average score
-0.3474
Total score value
-131.3313

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
42 P A -0.0632
43 V A 0.6772
44 D A -1.9006
45 R A -2.0997
46 S A -0.4466
47 L A 0.4234
48 L A 0.0000
49 K A -1.6678
50 L A -0.2912
51 K A -0.8092
52 M A 0.0000
53 V A 0.0000
54 Q A 0.0000
55 V A 0.0000
56 V A 0.0000
57 F A 0.0000
58 R A 0.0000
59 H A 0.0000
60 G A 0.0000
61 A A 0.0000
62 R A 0.0000
63 S A 0.0000
64 P A 0.0000
65 L A 0.2625
66 K A -0.8210
67 P A -0.2313
68 L A 0.0000
69 P A -0.0445
70 L A -0.1656
71 E A -2.1217
72 E A -2.2399
73 Q A -0.7526
74 V A -0.1147
75 E A -1.2234
76 W A 0.0000
77 N A -0.5543
78 P A -0.4333
79 Q A -1.1844
80 L A 0.1016
81 L A 0.3656
82 E A -1.4563
83 V A 0.9916
84 P A 0.1675
85 P A -0.3797
86 Q A -0.6981
87 T A 0.0000
88 Q A -1.1983
89 F A 0.0000
90 D A -1.7415
91 Y A -0.0854
92 T A 0.0098
93 V A 0.1596
94 T A -0.2465
95 N A -0.1336
96 L A 0.5162
97 A A 0.0554
98 G A -0.4039
99 G A -0.4094
100 P A -0.6128
101 K A -1.7525
102 P A -0.0908
103 Y A 1.3066
104 S A 0.1963
105 P A -0.0695
106 Y A 0.2512
107 D A -0.3129
108 S A -0.3384
109 Q A -1.0663
110 Y A 0.0000
111 H A -0.9025
112 E A -1.9260
113 T A -0.3566
114 T A 0.0246
115 L A 0.0000
116 K A -1.7274
117 G A -0.9332
118 G A -0.5218
119 M A 0.0000
120 F A 0.7670
121 A A 0.0000
122 G A 0.0000
123 Q A -0.1262
124 L A 0.0000
125 T A 0.0000
126 K A -0.7839
127 V A 0.2945
128 G A 0.0000
129 M A 0.0000
130 Q A -0.7766
131 Q A -0.5086
132 M A 0.0000
133 F A 0.1479
134 A A -0.0078
135 L A 0.0000
136 G A 0.0000
137 E A -0.9929
138 R A -0.6865
139 L A 0.0000
140 R A -0.5499
141 K A -1.6867
142 N A -0.8240
143 Y A 0.0000
144 V A -0.1810
145 E A -2.2489
146 D A -1.9521
147 I A 0.5116
148 P A -0.0894
149 F A 0.0000
150 L A 0.0000
151 S A -0.0934
152 P A -0.2473
153 T A -0.1167
154 F A 0.0000
155 N A -0.2405
156 P A -0.3418
157 Q A -1.2510
158 E A -0.4758
159 V A 0.0000
160 F A 0.3118
161 I A 0.0000
162 R A 0.0000
163 S A 0.0000
164 T A 0.0000
165 N A -0.1234
166 I A 0.0000
167 F A 1.3132
168 R A 0.0000
169 N A 0.0000
170 L A 0.0000
171 E A -0.2030
172 S A 0.0000
173 T A 0.0000
174 R A 0.0000
175 C A 0.0000
176 L A 0.0000
177 L A 0.0000
178 A A 0.0000
179 G A 0.0000
180 L A 0.0000
181 F A 0.0000
182 Q A -0.5243
183 C A 0.0473
184 Q A -0.6942
185 K A -1.2467
186 E A -1.9836
187 G A -0.4689
188 P A -0.2708
189 I A 0.0000
190 I A 0.6232
191 I A 0.0000
192 H A -0.1510
193 T A 0.0000
194 D A -0.6207
195 E A -1.8705
196 A A -0.6528
197 D A -1.8224
198 S A -0.5174
199 E A 0.0000
200 V A 0.2745
201 L A 0.0000
202 Y A 0.1336
203 P A 0.0000
204 N A 0.0000
205 Y A -0.0181
206 Q A -1.1700
207 S A -0.2740
208 C A 0.0000
209 W A 0.4210
210 S A 0.0000
211 L A 0.0000
212 R A -1.0277
213 Q A -1.5027
214 R A -1.0735
215 T A 0.0000
216 R A -1.9300
217 G A -0.8772
218 R A -0.7508
219 R A -1.8200
220 Q A -1.4845
221 T A -0.2467
222 A A 0.0000
223 S A 0.2110
224 L A 1.4972
225 Q A 0.0313
226 P A -0.3073
227 G A -0.1282
228 I A 0.0000
229 S A -0.3075
230 E A -1.4193
231 D A -0.5647
232 L A -0.1991
233 K A -1.8105
234 K A -1.1018
235 V A 0.0000
236 K A -0.5025
237 D A -2.1630
238 R A -2.1754
239 M A 0.0000
240 G A -0.4663
241 I A 0.0000
242 D A -1.8285
243 S A -0.5804
244 S A -0.4081
245 D A -1.2087
246 K A -1.8587
247 V A 0.0000
248 D A -0.5541
249 F A 0.0000
250 F A 0.7655
251 I A 0.6042
252 L A 0.0000
253 L A 0.0000
254 D A -0.2484
255 N A 0.0000
256 V A 0.0000
257 A A 0.0192
258 A A 0.0000
259 E A 0.0000
260 Q A -0.7354
261 A A -0.1106
262 H A -0.3305
263 N A -1.3058
264 L A -0.0159
265 P A -0.2125
266 S A -0.0587
267 C A 0.0518
268 P A -0.2027
269 M A -0.0532
270 L A 0.0000
271 K A -1.9192
272 R A -2.0734
273 F A -0.1034
274 A A -0.2818
275 R A -1.8190
276 M A -0.2399
277 I A 0.0000
278 E A -0.4825
279 Q A -0.4032
280 R A -0.3654
281 A A 0.0000
282 V A 0.0000
283 D A -0.3211
284 T A 0.0000
285 S A 0.0119
286 L A 0.2739
287 Y A 0.4409
288 I A 0.2800
289 L A 0.0000
290 P A -0.3254
291 K A -2.0407
292 E A -2.1640
293 D A -0.7438
294 R A -1.5245
295 E A -1.6643
296 S A 0.0000
297 L A 0.0000
298 Q A -0.3306
299 M A 0.0000
300 A A 0.0000
301 V A 0.0000
302 G A 0.0000
303 P A 0.0000
304 F A 0.0000
305 L A 0.0000
306 H A -0.1660
307 I A 0.3252
308 L A 0.0000
309 E A -0.3675
310 S A -0.0646
311 N A 0.0000
312 L A 0.0000
313 L A 0.4820
314 K A -0.5615
315 A A -0.0108
316 M A 0.2244
317 D A -1.7258
318 S A -0.5351
319 A A 0.0061
320 T A -0.0564
321 A A -0.2263
322 P A -0.5810
323 D A -2.1460
324 K A -1.9345
325 V A 0.1157 mutated: IA325V
326 R A -0.5343
327 K A -0.8221
328 L A 0.0000
329 Y A 0.0000
330 L A 0.0000
331 Y A 0.0000
332 A A 0.0000
333 A A 0.0000
334 H A 0.0000
335 D A -0.0615
336 V A 1.0452
337 T A 0.0000
338 F A 0.0000
339 I A 0.0000
340 P A 0.0000
341 L A 0.0000
342 L A 0.0000
343 M A 0.0000
344 T A 0.0000
345 L A 0.0000
346 G A -0.4708
347 I A 0.0000
348 F A 0.1075
349 D A -0.9775
350 H A -0.8641
351 K A -1.5543
352 W A -0.1186
353 P A 0.0000
354 P A -0.0513
355 F A 0.2068
356 A A 0.0483
357 V A 0.0000
358 D A 0.0000
359 L A 0.0000
360 T A 0.0000
361 M A 0.0000
362 E A 0.0000
363 L A 0.0000
364 Y A 0.0000
365 Q A -0.1608
366 H A -0.1991
367 L A 0.2428
368 E A -1.7303
369 S A -0.7539
370 K A -2.0636
371 E A -2.1004
372 W A -0.1936
373 F A 0.0000
374 V A 0.0000
375 Q A -0.1179
376 L A 0.0000
377 Y A -0.0597
378 Y A 0.0000
379 H A -0.6895
380 G A -0.8534
381 K A -2.1115
382 E A -2.1362
383 Q A -0.1668
384 V A 1.7349
385 P A 0.0000
386 R A -0.9256
387 G A -0.5994
388 C A -0.0619
389 P A -0.5746
390 D A -1.8494
391 G A -0.1629
392 L A 0.1730
393 C A 0.0000
394 P A -0.0566
395 L A 0.0000
396 D A -1.7072
397 M A 0.1240
398 F A 0.0000
399 L A 0.0338
400 N A -1.2222
401 A A -0.2278
402 M A 0.0000
403 S A -0.0912
404 V A 0.4840
405 Y A 0.0000
406 T A -0.0302
407 L A 0.0000
408 S A -0.1119
409 P A -0.5004
410 E A -2.1399
411 K A -1.9299
412 Y A 0.0000
413 H A -0.9793
414 A A -0.0409
415 L A 0.4843
416 C A 0.2385
417 S A -0.3461
418 Q A -1.2392
419 T A -0.2918

 

Laboratory of Theory of Biopolymers 2015