Project name: GHKGHKS12

Status: done

Started: 2026-05-21 12:19:26
Settings
Chain sequence(s) A: GHKGHKS
C: GHKGHKS
B: GHKGHKS
E: GHKGHKS
D: GHKGHKS
G: GHKGHKS
F: GHKGHKS
I: GHKGHKS
H: GHKGHKS
K: GHKGHKS
J: GHKGHKS
L: GHKGHKS
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:26)
Show buried residues

Minimal score value
-4.6256
Maximal score value
-1.328
Average score
-2.9762
Total score value
-249.9982

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.1810
2 H A -3.3530
3 K A -3.7815
4 G A -3.0956
5 H A -3.8154
6 K A -3.0759
7 S A -1.5986
1 G B -2.5913
2 H B -3.3751
3 K B -4.4665
4 G B -4.6118
5 H B -3.9531
6 K B -3.8403
7 S B -2.2199
1 G C -3.6331
2 H C -3.4797
3 K C -4.6256
4 G C -3.4920
5 H C -3.4541
6 K C -3.0147
7 S C -1.6115
1 G D -2.8195
2 H D -3.1797
3 K D -3.5677
4 G D -3.5042
5 H D -3.6130
6 K D -3.0661
7 S D -2.0460
1 G E -3.0677
2 H E -3.5557
3 K E -3.9550
4 G E -2.9744
5 H E -3.0874
6 K E -2.7396
7 S E -1.3957
1 G F -2.3218
2 H F -2.3921
3 K F -3.0917
4 G F -2.5287
5 H F -2.5902
6 K F -2.6380
7 S F -1.3575
1 G G -1.8804
2 H G -2.9909
3 K G -3.5669
4 G G -3.5281
5 H G -2.8651
6 K G -2.8574
7 S G -1.6142
1 G H -2.9372
2 H H -2.9278
3 K H -4.0336
4 G H -2.5853
5 H H -3.4376
6 K H -2.8207
7 S H -1.6421
1 G I -2.9080
2 H I -3.0015
3 K I -3.3472
4 G I -3.6470
5 H I -3.1286
6 K I -2.7787
7 S I -1.5334
1 G J -2.5657
2 H J -3.1666
3 K J -4.1598
4 G J -3.0548
5 H J -3.0965
6 K J -2.6779
7 S J -1.3280
1 G K -2.4299
2 H K -2.9920
3 K K -4.2368
4 G K -3.7716
5 H K -3.4289
6 K K -3.1225
7 S K -1.6223
1 G L -2.3719
2 H L -2.8706
3 K L -3.3610
4 G L -3.1628
5 H L -3.4232
6 K L -2.6825
7 S L -1.6798
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Laboratory of Theory of Biopolymers 2018