| Chain sequence(s) |
A: FGGHKGG
C: FGGHKGG B: FGGHKGG D: FGGHKGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:46)
[INFO] Main: Simulation completed successfully. (00:01:47)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.6652 | |
| 2 | G | A | 0.7997 | |
| 3 | G | A | -0.6066 | |
| 4 | H | A | -1.9700 | |
| 5 | K | A | -1.8400 | |
| 6 | G | A | -1.4912 | |
| 7 | G | A | -1.0388 | |
| 1 | F | B | 3.6952 | |
| 2 | G | B | 1.1340 | |
| 3 | G | B | -0.3255 | |
| 4 | H | B | -1.2628 | |
| 5 | K | B | -2.2430 | |
| 6 | G | B | -1.0672 | |
| 7 | G | B | -1.2289 | |
| 1 | F | C | -0.1424 | |
| 2 | G | C | -0.3377 | |
| 3 | G | C | -1.4826 | |
| 4 | H | C | -2.8268 | |
| 5 | K | C | -3.5062 | |
| 6 | G | C | -2.2812 | |
| 7 | G | C | -1.6705 | |
| 1 | F | D | -0.2773 | |
| 2 | G | D | -1.1254 | |
| 3 | G | D | -1.8127 | |
| 4 | H | D | -2.7687 | |
| 5 | K | D | -3.3681 | |
| 6 | G | D | -2.3526 | |
| 7 | G | D | -1.2178 |