| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRTSQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPRTFGQGTK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:00)
[INFO] Main: Simulation completed successfully. (00:01:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4573 | |
| 2 | V | H | -0.8138 | |
| 3 | Q | H | -1.0148 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.6111 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.1939 | |
| 8 | G | H | -0.5070 | |
| 9 | G | H | 0.3061 | |
| 11 | G | H | 0.9362 | |
| 12 | V | H | 1.7899 | |
| 13 | V | H | 0.0238 | |
| 14 | Q | H | -1.1525 | |
| 15 | P | H | -1.7702 | |
| 16 | G | H | -2.0451 | |
| 17 | R | H | -2.5882 | |
| 18 | S | H | -1.6286 | |
| 19 | L | H | -0.8428 | |
| 20 | R | H | -1.1943 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.2013 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.2634 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9741 | |
| 27 | G | H | -1.0849 | |
| 28 | F | H | -0.4108 | |
| 29 | T | H | -0.2112 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.7861 | |
| 36 | G | H | 0.2042 | |
| 37 | Y | H | 0.5321 | |
| 38 | G | H | -0.0116 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6400 | |
| 45 | A | H | -1.0243 | |
| 46 | P | H | -0.8204 | |
| 47 | G | H | -1.4788 | |
| 48 | K | H | -2.3527 | |
| 49 | G | H | -1.5692 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0018 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | L | H | 0.1154 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.5848 | |
| 58 | Y | H | -0.2716 | |
| 59 | D | H | -1.5637 | |
| 62 | E | H | -1.6216 | |
| 63 | S | H | -1.3963 | |
| 64 | N | H | -1.4440 | |
| 65 | K | H | -0.7445 | |
| 66 | Y | H | -0.0200 | |
| 67 | Y | H | -0.5760 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.5032 | |
| 70 | S | H | -1.6735 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.1955 | |
| 74 | G | H | -1.5738 | |
| 75 | R | H | -1.3308 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.6081 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.3803 | |
| 80 | R | H | 0.0000 | |
| 81 | D | H | -1.5668 | |
| 82 | N | H | -1.7942 | |
| 83 | S | H | -1.5736 | |
| 84 | K | H | -2.3851 | |
| 85 | N | H | -1.8271 | |
| 86 | T | H | -0.9845 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2321 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.7728 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.6279 | |
| 93 | S | H | -1.6655 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2688 | |
| 96 | A | H | -1.5423 | |
| 97 | E | H | -2.1878 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3067 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7379 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | V | H | 0.0000 | |
| 108 | K | H | 0.2075 | |
| 109 | F | H | 0.8416 | |
| 110 | Y | H | 1.1647 | |
| 111 | D | H | -0.2503 | |
| 112A | P | H | -0.1329 | |
| 112 | T | H | 0.2344 | |
| 113 | A | H | 0.0000 | |
| 114 | P | H | 0.0000 | |
| 115 | N | H | 0.0000 | |
| 116 | D | H | -0.0319 | |
| 117 | Y | H | 0.1590 | |
| 118 | W | H | -0.2003 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2827 | |
| 121 | G | H | -0.2787 | |
| 122 | T | H | 0.5307 | |
| 123 | L | H | 1.6671 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.5570 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4263 | |
| 128 | S | H | -0.3119 | |
| 1 | D | L | -2.4294 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2236 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3870 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7252 | |
| 8 | P | L | -0.6704 | |
| 9 | S | L | -0.9692 | |
| 10 | S | L | -0.9522 | |
| 11 | L | L | -0.1786 | |
| 12 | S | L | -0.2520 | |
| 13 | A | L | -0.1267 | |
| 14 | S | L | -0.0022 | |
| 15 | V | L | 0.6518 | |
| 16 | G | L | -0.7063 | |
| 17 | D | L | -1.7260 | |
| 18 | R | L | -2.2986 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6646 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7915 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.6166 | |
| 25 | T | L | 0.0000 | |
| 26 | S | L | -1.7609 | |
| 27 | Q | L | -1.6253 | |
| 28 | S | L | -0.8430 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.1647 | |
| 37 | S | L | -0.0206 | |
| 38 | Y | L | 0.6215 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6464 | |
| 46 | P | L | -1.1806 | |
| 47 | G | L | -1.6674 | |
| 48 | K | L | -2.6034 | |
| 49 | A | L | -1.5424 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.2983 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.3083 | |
| 56 | A | L | 0.1770 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.1887 | |
| 66 | S | L | 0.1182 | |
| 67 | L | L | 0.3616 | |
| 68 | Q | L | 0.0000 | |
| 69 | S | L | -0.3478 | |
| 70 | G | L | -0.5304 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3691 | |
| 74 | S | L | -0.4030 | |
| 75 | R | L | -0.7151 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3435 | |
| 78 | G | L | -0.2753 | |
| 79 | S | L | -0.6371 | |
| 80 | G | L | -0.9659 | |
| 83 | S | L | -0.8719 | |
| 84 | G | L | -0.9437 | |
| 85 | T | L | -1.4720 | |
| 86 | D | L | -1.8423 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7111 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6240 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.3024 | |
| 93 | S | L | -1.1888 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.7209 | |
| 96 | P | L | -0.5305 | |
| 97 | E | L | -1.3075 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | 0.7259 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.7442 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | Y | L | 0.9167 | |
| 109 | S | L | 0.0634 | |
| 114 | T | L | -0.0614 | |
| 115 | P | L | -0.5661 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | -0.6807 | |
| 118 | F | L | -0.4335 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.5726 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.5312 |