Project name: pep6

Status: done

Started: 2026-07-27 20:43:22
Settings
Chain sequence(s) A: SDSDLPPVAIIGVGKCNLSLEELLENEKRNDKLYELREKLRREEIEK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-5.2808
Maximal score value
3.6392
Average score
-1.7274
Total score value
-81.1857

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.2579
2 D A -2.1380
3 S A -1.5729
4 D A -1.8093
5 L A 0.4149
6 P A 0.7639
7 P A 0.7554
8 V A 2.6863
9 A A 2.5747
10 I A 3.6392
11 I A 3.4876
12 G A 1.5714
13 V A 1.7381
14 G A -0.5039
15 K A -1.4656
16 C A -0.3833
17 N A -0.9365
18 L A 0.1141
19 S A -0.0578
20 L A 0.4509
21 E A -1.7937
22 E A -2.1791
23 L A -1.1646
24 L A -1.9380
25 E A -4.1348
26 N A -3.9331
27 E A -4.9874
28 K A -5.2808
29 R A -5.1096
30 N A -4.6243
31 D A -4.9817
32 K A -4.2638
33 L A -2.5352
34 Y A -1.8488
35 E A -2.7964
36 L A -1.9728
37 R A -2.9325
38 E A -3.1387
39 K A -3.4949
40 L A -2.3738
41 R A -3.8725
42 R A -4.2588
43 E A -4.2570
44 E A -3.5105
45 I A -1.3935
46 E A -3.3002
47 K A -3.1805
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Laboratory of Theory of Biopolymers 2018