Project name: REST_test

Status: done

Started: 2025-06-01 18:19:42
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Chain sequence(s) A: MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYLAWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAKRH
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YG39A
Energy difference between WT (input) and mutated protein (by FoldX) 2.97905 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:02:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:06)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:56)
Show buried residues

Minimal score value
-2.5078
Maximal score value
2.2913
Average score
0.0715
Total score value
11.6509

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9691
2 G A -0.3146
3 S A -0.3099
4 T A 0.1068
5 W A 1.1367
6 G A -0.1587
7 S A -0.2832
8 P A -0.1020
9 G A 0.0378
10 W A 1.4390
11 V A 1.7856
12 R A 0.0000
13 L A 0.4950
14 A A 0.1456
15 L A 0.2270
16 C A 0.0000
17 L A 0.7711
18 T A 0.0938
19 G A 0.0000
20 L A 0.7124
21 V A 1.8718
22 L A 0.5756
23 S A 0.0000
24 L A 0.7912
25 Y A 0.3042
26 A A 0.0000
27 L A 0.3008
28 H A -0.8786
29 V A 0.0000
30 K A -0.2587
31 A A -0.0211
32 A A -0.0365
33 R A -0.6433
34 A A -0.3580
35 R A -2.1597
36 D A -2.5078
37 R A -2.4896
38 D A -2.1676
39 G A -0.9169 mutated: YG39A
40 R A -1.8902
41 A A -0.0533
42 L A 1.5489
43 C A 0.0000
44 D A 0.1410
45 V A 1.6993
46 G A 0.1103
47 T A -0.1033
48 A A 0.1141
49 I A 0.5534
50 S A 0.0194
51 C A 0.0000
52 S A 0.0000
53 R A -0.9049
54 V A 0.0436
55 F A 0.2133
56 S A -0.0567
57 S A -0.3745
58 R A -1.7962
59 W A 0.0003
60 G A -0.2949
61 R A -1.8558
62 G A 0.0000
63 F A 0.5001
64 G A 0.3200
65 L A 1.3333
66 V A 0.3682
67 E A -0.5322
68 H A -0.7131
69 V A 1.8413
70 L A 1.6554
71 G A -0.1694
72 Q A -1.5758
73 D A -2.0117
74 S A 0.0041
75 I A 2.1594
76 L A 1.2191
77 N A 0.0000
78 Q A -0.6130
79 S A -0.4448
80 N A -0.1884
81 S A 0.0234
82 I A 0.5433
83 F A 0.4682
84 G A 0.0164
85 C A 0.4387
86 I A 2.0699
87 F A 0.5918
88 Y A 0.0000
89 T A 0.0390
90 L A 0.5407
91 Q A 0.0000
92 L A 0.5278
93 L A 1.5936
94 L A 0.0000
95 G A 0.0053
96 C A 0.2181
97 L A 0.0367
98 R A -1.8125
99 T A -0.6768
100 R A -1.6299
101 W A 0.8494
102 A A 0.0000
103 S A 0.0000
104 V A 0.4585
105 L A 0.6718
106 M A 0.0000
107 L A 0.4082
108 L A 1.3217
109 S A 0.1997
110 S A 0.0000
111 L A 1.1804
112 V A 1.9233
113 S A 0.3366
114 L A 0.2631
115 A A 0.0919
116 G A -0.0617
117 S A 0.0000
118 V A 1.8314
119 Y A 0.6857
120 L A 0.2852
121 A A 0.2631
122 W A 1.1885
123 I A 0.0000
124 L A 0.0000
125 F A 1.7842
126 F A 2.2913
127 V A 1.0281
128 L A 0.5416
129 Y A 1.4822
130 D A 0.0000
131 F A 1.8630
132 C A 0.0000
133 I A 0.7716
134 V A 0.0000
135 C A 0.0000
136 I A 0.5731
137 T A 0.0667
138 T A 0.0104
139 Y A 0.1600
140 A A 0.0857
141 I A 0.0000
142 N A 0.0000
143 V A 0.9734
144 S A 0.0915
145 L A 0.0000
146 M A 0.0000
147 W A 1.2289
148 L A 0.4465
149 S A 0.0000
150 F A 1.2454
151 R A -1.6324
152 K A -0.5849
153 V A 0.5058
154 Q A -1.3828
155 E A -2.0797
156 P A -0.7915
157 Q A -1.3259
158 G A -0.9755
159 K A -1.7710
160 A A -0.5507
161 K A -2.0299
162 R A -2.3465
163 H A -1.3418
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Laboratory of Theory of Biopolymers 2018