Project name: 10bd12bcf5d88ef

Status: done

Started: 2024-12-19 07:27:55
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Chain sequence(s) E: SVLTQPPSASGTPGQRVTISCSGSSSNIETNYVSWYQQFPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAEYYCGTWDDNSWVFGGGTKLTV
D: QLQLQESGPGLVKPSETLSLTCTVSGASIDRSTYYWGWIRQPPGKGLEWIANIYYNGRAVYSPSLKSRVTISVDTSKNQFSLKVRSLTAADTAVYYCATRWNYFFDFDYWGRGTLVTV
input PDB
Selected Chain(s) D,E
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:44)
Show buried residues

Minimal score value
-2.8318
Maximal score value
2.0233
Average score
-0.6381
Total score value
-142.9306

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q D -1.6285
2 L D 0.0000
3 Q D -1.9667
4 L D 0.0000
5 Q D -2.1721
6 E D -1.4140
7 S D -0.7563
8 G D -0.2733
9 P D 0.1102
11 G D 0.5002
12 L D 1.1871
13 V D 0.0000
14 K D -1.7044
15 P D -1.6663
16 S D -1.6447
17 E D -2.2900
18 T D -2.0530
19 L D 0.0000
20 S D -0.9737
21 L D 0.0000
22 T D -0.5694
23 C D 0.0000
24 T D -1.2705
25 V D 0.0000
26 S D -1.2114
27 G D -1.2399
28 A D -1.0280
29 S D -1.3361
30 I D 0.0000
31 D D -2.8155
34 R D -2.8318
35 S D -1.4932
36 T D 0.0000
37 Y D 0.1554
38 Y D 0.0000
39 W D 0.0000
40 G D 0.0000
41 W D 0.0000
42 I D 0.0000
43 R D 0.0000
44 Q D 0.0000
45 P D -0.8325
46 P D -0.9765
47 G D -1.5382
48 K D -2.2790
49 G D -1.5042
50 L D 0.0000
51 E D -1.0771
52 W D 0.0000
53 I D 0.0000
54 A D 0.0000
55 N D 0.0000
56 I D 0.0000
57 Y D -1.0217
58 Y D -1.6308
59 N D -2.3619
63 G D -1.8340
64 R D -2.2228
65 A D -0.8874
66 V D -0.5716
67 Y D -0.5388
68 S D 0.0000
69 P D -0.9156
70 S D -0.8935
71 L D 0.0000
72 K D -2.0102
74 S D -1.6478
75 R D -2.0193
76 V D 0.0000
77 T D -1.0171
78 I D 0.0000
79 S D -0.5995
80 V D -0.8166
81 D D -1.3482
82 T D -1.6225
83 S D -1.3883
84 K D -2.2126
85 N D -1.7225
86 Q D -1.3694
87 F D 0.0000
88 S D -0.4535
89 L D 0.0000
90 K D -1.4014
91 V D 0.0000
92 R D -2.6902
93 S D -1.7700
94 L D 0.0000
95 T D -0.4708
96 A D -0.0119
97 A D 0.1522
98 D D 0.0000
99 T D 0.5372
100 A D 0.0000
101 V D 0.2887
102 Y D 0.0000
103 Y D 0.0000
104 C D 0.0000
105 A D 0.0000
106 T D 0.0000
107 R D 0.4452
108 W D 0.6750
109 N D 0.8344
110 Y D 2.0233
112 F D 2.0074
113 F D 1.0649
114 D D 0.0000
115 F D 0.0000
116 D D -0.0925
117 Y D -0.3595
118 W D -0.8557
119 G D 0.0000
120 R D -2.1644
121 G D 0.0000
122 T D -0.2630
123 L D 0.9353
124 V D 0.0000
125 T D 0.5846
126 V D 0.2099
2 S E 0.5400
3 V E 1.5567
4 L E 0.0000
5 T E 0.1643
6 Q E 0.0000
7 P E -0.5290
8 P E -0.8872
9 S E -0.7774
11 A E -0.3274
12 S E -0.1307
13 G E -0.6572
14 T E -0.7828
15 P E -1.3010
16 G E -1.8740
17 Q E -2.3768
18 R E -2.6558
19 V E 0.0000
20 T E -0.6171
21 I E 0.0000
22 S E -0.3985
23 C E 0.0000
24 S E -0.3224
25 G E -0.4145
26 S E -0.3660
27 S E -0.9710
28 S E -1.0689
29 N E 0.0000
30 I E 0.0000
35 E E -1.5318
36 T E -0.8008
37 N E -0.8380
38 Y E -0.3170
39 V E 0.0000
40 S E 0.0000
41 W E 0.0000
42 Y E 0.0000
43 Q E 0.0000
44 Q E 0.0000
45 F E 0.1168
46 P E -0.2785
47 G E -0.3910
48 T E -0.5405
49 A E -0.6846
50 P E 0.0000
51 K E -1.5061
52 L E 0.0000
53 L E 0.0000
54 I E 0.0000
55 Y E -0.5070
56 R E -1.4212
57 N E -1.9449
65 N E -2.5404
66 Q E -2.3124
67 R E -2.1586
68 P E -0.8220
69 S E -0.6831
70 G E -0.8312
71 V E -0.7736
72 P E -1.3111
74 D E -2.2201
75 R E -1.5785
76 F E 0.0000
77 S E -1.3181
78 G E -1.2884
79 S E -1.3288
80 K E -1.2497
83 S E -0.9435
84 G E -1.0956
85 T E -1.0429
86 S E -0.8455
87 A E 0.0000
88 S E -0.5037
89 L E 0.0000
90 A E -0.6604
91 I E 0.0000
92 S E -1.9179
93 G E -1.6889
94 L E 0.0000
95 R E -2.1143
96 S E -1.7006
97 E E -2.2665
98 D E 0.0000
99 E E -1.4341
100 A E 0.0000
101 E E -0.6841
102 Y E 0.0000
103 Y E 0.0000
104 C E 0.0000
105 G E 0.0000
106 T E 0.0000
107 W E -0.7985
108 D E -1.7379
109 D E -2.6140
114 N E -2.1136
115 S E -1.2330
116 W E 0.0000
117 V E 0.1963
118 F E 0.0000
119 G E 0.0000
120 G E -0.6178
121 G E -1.0569
122 T E 0.0000
123 K E -1.1253
124 L E 0.0000
125 T E -0.0190
126 V E 0.3647
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Laboratory of Theory of Biopolymers 2018