Project name: query_structure

Status: done

Started: 2026-03-17 00:13:28
Settings
Chain sequence(s) A: MPCSCKKYCDPWEVIDGSCGLFNSKYICCREK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-2.6407
Maximal score value
1.682
Average score
-0.3562
Total score value
-11.3993

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0100
2 P A 0.1418
3 C A -0.0226
4 S A 0.1595
5 C A -0.5154
6 K A -1.8605
7 K A -2.0023
8 Y A 0.3445
9 C A 0.5042
10 D A -0.2088
11 P A 0.1019
12 W A 0.1469
13 E A -0.2640
14 V A 0.9503
15 I A 1.1239
16 D A -0.6911
17 G A -0.3060
18 S A -0.6048
19 C A -0.7543
20 G A -0.3071
21 L A 1.5987
22 F A 1.6820
23 N A -0.4849
24 S A -0.9322
25 K A -1.7975
26 Y A -0.6617
27 I A 0.0347
28 C A 0.0000
29 C A -0.5776
30 R A -1.9341
31 E A -2.6321
32 K A -2.6407
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018