Project name: 113aa8e4983a8d9

Status: done

Started: 2026-02-11 11:53:04
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Chain sequence(s) A: GGHKGHK
C: GGHKGHK
B: GGHKGHK
E: GGHKGHK
D: GGHKGHK
G: GGHKGHK
F: GGHKGHK
I: GGHKGHK
H: GGHKGHK
K: GGHKGHK
J: GGHKGHK
L: GGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:20)
Show buried residues

Minimal score value
-3.9299
Maximal score value
0.0
Average score
-1.9994
Total score value
-167.9497

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.1988
2 G A -1.4594
3 H A -2.0755
4 K A -2.8809
5 G A 0.0000
6 H A -3.2358
7 K A -3.6925
1 G B -1.0978
2 G B -1.4630
3 H B -2.2048
4 K B -2.7376
5 G B -2.6488
6 H B -3.2685
7 K B -3.3228
1 G C -1.0523
2 G C -1.4006
3 H C -2.1513
4 K C -2.4756
5 G C 0.0000
6 H C -2.6152
7 K C -2.8254
1 G D -1.1808
2 G D -1.3334
3 H D -1.6927
4 K D -2.3571
5 G D 0.0000
6 H D -2.5572
7 K D -3.2550
1 G E -1.1507
2 G E -1.2092
3 H E 0.0000
4 K E -2.2022
5 G E 0.0000
6 H E -2.2849
7 K E -3.1152
1 G F -1.1707
2 G F -1.4800
3 H F -1.8980
4 K F -2.6353
5 G F 0.0000
6 H F -2.6784
7 K F -3.1609
1 G G -1.0141
2 G G -1.5875
3 H G -2.5133
4 K G -3.3291
5 G G -3.2071
6 H G -2.7965
7 K G -2.9038
1 G H -1.0662
2 G H -1.6828
3 H H -2.4417
4 K H -3.6869
5 G H -3.1963
6 H H -3.2788
7 K H -3.4660
1 G I -1.1738
2 G I -1.5342
3 H I -2.4383
4 K I -3.4077
5 G I 0.0000
6 H I -3.5313
7 K I -3.9299
1 G J -1.0399
2 G J -1.1051
3 H J -1.4441
4 K J -2.2837
5 G J 0.0000
6 H J -3.1032
7 K J -3.5094
1 G K -1.0651
2 G K -1.0407
3 H K -1.3512
4 K K -2.1155
5 G K 0.0000
6 H K -2.6410
7 K K -3.1222
1 G L -1.1023
2 G L -1.2222
3 H L -1.6496
4 K L -2.4188
5 G L 0.0000
6 H L -2.9329
7 K L -3.4492
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Laboratory of Theory of Biopolymers 2018