| Chain sequence(s) |
A: GGHKGHK
C: GGHKGHK B: GGHKGHK E: GGHKGHK D: GGHKGHK G: GGHKGHK F: GGHKGHK I: GGHKGHK H: GGHKGHK K: GGHKGHK J: GGHKGHK L: GGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:10:16)
[INFO] Main: Simulation completed successfully. (00:10:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.1988 | |
| 2 | G | A | -1.4594 | |
| 3 | H | A | -2.0755 | |
| 4 | K | A | -2.8809 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | -3.2358 | |
| 7 | K | A | -3.6925 | |
| 1 | G | B | -1.0978 | |
| 2 | G | B | -1.4630 | |
| 3 | H | B | -2.2048 | |
| 4 | K | B | -2.7376 | |
| 5 | G | B | -2.6488 | |
| 6 | H | B | -3.2685 | |
| 7 | K | B | -3.3228 | |
| 1 | G | C | -1.0523 | |
| 2 | G | C | -1.4006 | |
| 3 | H | C | -2.1513 | |
| 4 | K | C | -2.4756 | |
| 5 | G | C | 0.0000 | |
| 6 | H | C | -2.6152 | |
| 7 | K | C | -2.8254 | |
| 1 | G | D | -1.1808 | |
| 2 | G | D | -1.3334 | |
| 3 | H | D | -1.6927 | |
| 4 | K | D | -2.3571 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -2.5572 | |
| 7 | K | D | -3.2550 | |
| 1 | G | E | -1.1507 | |
| 2 | G | E | -1.2092 | |
| 3 | H | E | 0.0000 | |
| 4 | K | E | -2.2022 | |
| 5 | G | E | 0.0000 | |
| 6 | H | E | -2.2849 | |
| 7 | K | E | -3.1152 | |
| 1 | G | F | -1.1707 | |
| 2 | G | F | -1.4800 | |
| 3 | H | F | -1.8980 | |
| 4 | K | F | -2.6353 | |
| 5 | G | F | 0.0000 | |
| 6 | H | F | -2.6784 | |
| 7 | K | F | -3.1609 | |
| 1 | G | G | -1.0141 | |
| 2 | G | G | -1.5875 | |
| 3 | H | G | -2.5133 | |
| 4 | K | G | -3.3291 | |
| 5 | G | G | -3.2071 | |
| 6 | H | G | -2.7965 | |
| 7 | K | G | -2.9038 | |
| 1 | G | H | -1.0662 | |
| 2 | G | H | -1.6828 | |
| 3 | H | H | -2.4417 | |
| 4 | K | H | -3.6869 | |
| 5 | G | H | -3.1963 | |
| 6 | H | H | -3.2788 | |
| 7 | K | H | -3.4660 | |
| 1 | G | I | -1.1738 | |
| 2 | G | I | -1.5342 | |
| 3 | H | I | -2.4383 | |
| 4 | K | I | -3.4077 | |
| 5 | G | I | 0.0000 | |
| 6 | H | I | -3.5313 | |
| 7 | K | I | -3.9299 | |
| 1 | G | J | -1.0399 | |
| 2 | G | J | -1.1051 | |
| 3 | H | J | -1.4441 | |
| 4 | K | J | -2.2837 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -3.1032 | |
| 7 | K | J | -3.5094 | |
| 1 | G | K | -1.0651 | |
| 2 | G | K | -1.0407 | |
| 3 | H | K | -1.3512 | |
| 4 | K | K | -2.1155 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | -2.6410 | |
| 7 | K | K | -3.1222 | |
| 1 | G | L | -1.1023 | |
| 2 | G | L | -1.2222 | |
| 3 | H | L | -1.6496 | |
| 4 | K | L | -2.4188 | |
| 5 | G | L | 0.0000 | |
| 6 | H | L | -2.9329 | |
| 7 | K | L | -3.4492 |