| Chain sequence(s) |
A: SGHKGHK
C: SGHKGHK B: SGHKGHK D: SGHKGHK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:34)
[INFO] Main: Simulation completed successfully. (00:01:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -1.6462 | |
| 2 | G | A | -2.2389 | |
| 3 | H | A | -3.2708 | |
| 4 | K | A | -4.2451 | |
| 5 | G | A | -3.7021 | |
| 6 | H | A | -4.2602 | |
| 7 | K | A | -4.4598 | |
| 1 | S | B | -1.8107 | |
| 2 | G | B | 0.0000 | |
| 3 | H | B | -2.7788 | |
| 4 | K | B | -4.1825 | |
| 5 | G | B | -3.7894 | |
| 6 | H | B | -4.0670 | |
| 7 | K | B | -4.2234 | |
| 1 | S | C | -1.7923 | |
| 2 | G | C | -1.9267 | |
| 3 | H | C | -2.8333 | |
| 4 | K | C | -3.4483 | |
| 5 | G | C | -3.4302 | |
| 6 | H | C | -3.5377 | |
| 7 | K | C | -3.6352 | |
| 1 | S | D | -1.6006 | |
| 2 | G | D | -2.3396 | |
| 3 | H | D | -3.1456 | |
| 4 | K | D | -3.9284 | |
| 5 | G | D | -2.8118 | |
| 6 | H | D | -3.5369 | |
| 7 | K | D | -3.2419 |