| Chain sequence(s) |
A: LPAPKNLVVSRVTEDSARLSWAKRPGAFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVDVKYDIDSRPISSNPLSAIFTT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:57)
[INFO] Main: Simulation completed successfully. (00:00:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | A | 0.8845 | |
| 2 | P | A | -0.3911 | |
| 3 | A | A | -0.8076 | |
| 4 | P | A | 0.0000 | |
| 5 | K | A | -2.4062 | |
| 6 | N | A | -1.5836 | |
| 7 | L | A | -0.2585 | |
| 8 | V | A | 1.1488 | |
| 9 | V | A | 0.6776 | |
| 10 | S | A | -0.5960 | |
| 11 | R | A | -1.9984 | |
| 12 | V | A | -1.0182 | |
| 13 | T | A | -1.7625 | |
| 14 | E | A | -2.9898 | |
| 15 | D | A | -2.6517 | |
| 16 | S | A | -2.0274 | |
| 17 | A | A | 0.0000 | |
| 18 | R | A | -1.1606 | |
| 19 | L | A | 0.0000 | |
| 20 | S | A | -0.4101 | |
| 21 | W | A | 0.0000 | |
| 22 | A | A | -1.5886 | |
| 23 | K | A | -2.1653 | |
| 24 | R | A | -2.4416 | |
| 25 | P | A | -1.4586 | |
| 26 | G | A | -1.5207 | |
| 27 | A | A | -1.2242 | |
| 28 | F | A | 0.0000 | |
| 29 | D | A | -1.8556 | |
| 30 | S | A | -0.8604 | |
| 31 | F | A | 0.0000 | |
| 32 | L | A | 0.7193 | |
| 33 | I | A | 0.0000 | |
| 34 | Q | A | 0.5452 | |
| 35 | Y | A | 0.3645 | |
| 36 | Q | A | -0.9321 | |
| 37 | E | A | -2.0567 | |
| 38 | S | A | -1.5987 | |
| 39 | E | A | -2.7705 | |
| 40 | K | A | -2.4306 | |
| 41 | V | A | -0.1213 | |
| 42 | G | A | -1.0930 | |
| 43 | E | A | -1.5321 | |
| 44 | A | A | -0.3268 | |
| 45 | I | A | 0.8861 | |
| 46 | V | A | 1.6940 | |
| 47 | L | A | 1.2833 | |
| 48 | T | A | 0.4883 | |
| 49 | V | A | 0.0000 | |
| 50 | P | A | -1.1274 | |
| 51 | G | A | 0.0000 | |
| 52 | S | A | -1.4395 | |
| 53 | E | A | -1.6958 | |
| 54 | R | A | -1.1714 | |
| 55 | S | A | -0.7353 | |
| 56 | Y | A | -0.7600 | |
| 57 | D | A | -1.6249 | |
| 58 | L | A | 0.0000 | |
| 59 | T | A | -1.3320 | |
| 60 | G | A | -1.4769 | |
| 61 | L | A | 0.0000 | |
| 62 | K | A | -2.9730 | |
| 63 | P | A | -2.4723 | |
| 64 | G | A | -1.7883 | |
| 65 | T | A | -2.2127 | |
| 66 | E | A | -1.9578 | |
| 67 | Y | A | 0.0000 | |
| 68 | T | A | -0.0220 | |
| 69 | V | A | 0.0000 | |
| 70 | S | A | 0.2504 | |
| 71 | I | A | 0.0000 | |
| 72 | Y | A | 0.0645 | |
| 73 | G | A | 0.0000 | |
| 74 | V | A | -0.1466 | |
| 75 | D | A | -0.3648 | |
| 76 | V | A | 0.3941 | |
| 77 | K | A | -0.6781 | |
| 78 | Y | A | 0.0599 | |
| 79 | D | A | -0.2556 | |
| 80 | I | A | 0.7382 | |
| 81 | D | A | -1.3207 | |
| 82 | S | A | -1.0088 | |
| 83 | R | A | -1.8546 | |
| 84 | P | A | -0.6358 | |
| 85 | I | A | 0.1155 | |
| 86 | S | A | -0.1076 | |
| 87 | S | A | 0.0000 | |
| 88 | N | A | -1.0804 | |
| 89 | P | A | -0.8631 | |
| 90 | L | A | -0.7019 | |
| 91 | S | A | 0.0807 | |
| 92 | A | A | 1.1891 | |
| 93 | I | A | 1.8094 | |
| 94 | F | A | 0.0000 | |
| 95 | T | A | -0.7745 | |
| 96 | T | A | -1.8715 |