Project name: query_structure

Status: done

Started: 2026-03-17 01:12:45
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGTWVVRRVSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-3.435
Maximal score value
2.5145
Average score
-0.6249
Total score value
-58.738

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6360
2 S A 0.0801
3 D A -0.5431
4 V A -0.7055
5 P A 0.0000
6 R A -3.2399
7 D A -3.4350
8 L A 0.0000
9 E A -2.1286
10 V A 0.0910
11 V A 1.5349
12 A A 0.8854
13 A A 0.2838
14 T A -0.5407
15 P A -1.1429
16 T A -1.0016
17 S A -0.5402
18 L A 0.0000
19 L A 0.7258
20 I A 0.0000
21 S A -1.1472
22 W A 0.0000
23 D A -3.2832
24 A A -1.6894
25 P A 0.0000
26 A A 0.1661
27 V A 0.4828
28 T A -0.1550
29 V A -0.5796
30 R A -1.4499
31 Y A -0.5882
32 Y A 0.0000
33 R A -0.5579
34 I A 0.0000
35 T A -0.5799
36 Y A -0.3265
37 G A 0.0000
38 E A -1.5079
39 T A -1.2234
40 G A -1.2240
41 G A -1.3948
42 N A -1.5229
43 S A -0.8445
44 P A -0.3377
45 V A 0.3962
46 Q A -0.9510
47 E A -1.7057
48 F A -0.7140
49 T A -0.3383
50 V A 0.0000
51 P A -1.0202
52 G A -1.1353
53 S A -1.2651
54 K A -2.1678
55 S A -1.4378
56 T A -0.7844
57 A A 0.0000
58 T A 0.2312
59 I A 0.0000
60 S A -0.6616
61 G A -1.0310
62 L A 0.0000
63 K A -2.3602
64 P A -1.6636
65 G A -1.4350
66 V A -1.3716
67 D A -2.0634
68 Y A 0.0000
69 T A -0.7772
70 I A 0.0000
71 T A -0.3641
72 V A 0.0000
73 Y A -0.2199
74 A A 0.0000
75 V A 0.0000
76 T A -0.7801
77 G A -0.3497
78 T A 0.6264
79 W A 1.8522
80 V A 2.5145
81 V A 1.2490
82 R A -1.3099
83 R A -2.0821
84 V A -0.2006
85 S A 0.0000
86 K A -1.6103
87 P A -0.8057
88 I A -0.6554
89 S A -0.5488
90 I A -0.7404
91 N A -1.7299
92 Y A -1.4813
93 R A -2.5286
94 T A -1.5139
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Laboratory of Theory of Biopolymers 2018