| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVTNPWYWIGVPAADSYYDYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:30)
[INFO] Main: Simulation completed successfully. (00:01:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2529 | |
| 2 | V | A | -0.5949 | |
| 3 | Q | A | -1.5359 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.6655 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0909 | |
| 8 | G | A | -1.0162 | |
| 9 | G | A | -0.8175 | |
| 10 | G | A | -0.0611 | |
| 11 | L | A | 1.0472 | |
| 12 | V | A | 0.1856 | |
| 13 | Q | A | -1.2425 | |
| 14 | A | A | -1.4604 | |
| 15 | G | A | -1.3505 | |
| 16 | G | A | -0.8808 | |
| 17 | S | A | -1.2263 | |
| 18 | L | A | -1.0338 | |
| 19 | R | A | -2.1281 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8472 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1372 | |
| 24 | A | A | -0.6894 | |
| 25 | S | A | -0.7243 | |
| 26 | G | A | -0.0894 | |
| 27 | Y | A | 0.5490 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.0017 | |
| 30 | D | A | -1.0197 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | 0.4832 | |
| 33 | Y | A | 0.0503 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8572 | |
| 40 | A | A | -1.8235 | |
| 41 | P | A | -1.2846 | |
| 42 | G | A | -1.7558 | |
| 43 | K | A | -2.8440 | |
| 44 | E | A | -3.2198 | |
| 45 | R | A | -2.4346 | |
| 46 | E | A | -1.4617 | |
| 47 | F | A | -0.2791 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.3756 | |
| 54 | G | A | -1.0990 | |
| 55 | T | A | -1.0114 | |
| 56 | N | A | -1.3072 | |
| 57 | T | A | -0.2183 | |
| 58 | Y | A | 0.4975 | |
| 59 | Y | A | -0.2597 | |
| 60 | A | A | -0.9960 | |
| 61 | D | A | -2.2791 | |
| 62 | S | A | -1.7659 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4934 | |
| 65 | G | A | -1.7950 | |
| 66 | R | A | -1.5209 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7441 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.4650 | |
| 71 | R | A | -1.1225 | |
| 72 | D | A | -1.6579 | |
| 73 | N | A | -1.7825 | |
| 74 | A | A | -1.2638 | |
| 75 | K | A | -2.1003 | |
| 76 | N | A | -1.4972 | |
| 77 | T | A | -1.2864 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6327 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2260 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4495 | |
| 84 | S | A | -1.2402 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.3614 | |
| 87 | P | A | -1.7082 | |
| 88 | E | A | -2.3383 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9121 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.6173 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.5004 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | T | A | 0.0000 | |
| 99 | N | A | 0.3467 | |
| 100 | P | A | 0.0000 | |
| 101 | W | A | 1.9234 | |
| 102 | Y | A | 2.7513 | |
| 103 | W | A | 2.9986 | |
| 104 | I | A | 3.1696 | |
| 105 | G | A | 1.6802 | |
| 106 | V | A | 2.2448 | |
| 107 | P | A | 0.5385 | |
| 108 | A | A | -0.0963 | |
| 109 | A | A | -0.5673 | |
| 110 | D | A | -1.7247 | |
| 111 | S | A | -0.8435 | |
| 112 | Y | A | -0.0581 | |
| 113 | Y | A | -0.3307 | |
| 114 | D | A | -0.6624 | |
| 115 | Y | A | -0.3015 | |
| 116 | W | A | -0.1616 | |
| 117 | G | A | -0.8334 | |
| 118 | Q | A | -1.5505 | |
| 119 | G | A | -1.0333 | |
| 120 | T | A | 0.0000 | |
| 121 | Q | A | -1.1722 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.2814 | |
| 124 | V | A | 0.0000 | |
| 125 | S | A | -0.4737 | |
| 126 | S | A | -0.6609 | |
| 127 | L | A | 0.3124 | |
| 128 | E | A | -1.3859 |