| Chain sequence(s) |
A: FFGHKGG
C: FFGHKGG B: FFGHKGG D: FFGHKGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:04)
[INFO] Main: Simulation completed successfully. (00:01:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 4.1528 | |
| 2 | F | A | 2.1403 | |
| 3 | G | A | -0.4173 | |
| 4 | H | A | -1.9886 | |
| 5 | K | A | -3.2111 | |
| 6 | G | A | -2.2935 | |
| 7 | G | A | -1.8770 | |
| 1 | F | B | 5.9126 | |
| 2 | F | B | 3.1523 | |
| 3 | G | B | 0.5825 | |
| 4 | H | B | -0.7683 | |
| 5 | K | B | -2.7820 | |
| 6 | G | B | 0.0000 | |
| 7 | G | B | -2.1650 | |
| 1 | F | C | 6.4281 | |
| 2 | F | C | 5.1646 | |
| 3 | G | C | 1.9910 | |
| 4 | H | C | -1.4100 | |
| 5 | K | C | -2.5290 | |
| 6 | G | C | -2.3945 | |
| 7 | G | C | -1.9052 | |
| 1 | F | D | 6.3386 | |
| 2 | F | D | 4.5191 | |
| 3 | G | D | 0.4250 | |
| 4 | H | D | -1.6086 | |
| 5 | K | D | -2.6097 | |
| 6 | G | D | -2.0000 | |
| 7 | G | D | -1.7261 |