Project name: RFC22

Status: done

Started: 2025-07-15 15:43:32
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Chain sequence(s) A: GDAEVEENVNIDIKGSEKKKLNIEIKVKAANGASITIEINTTIDTTKKDQKLTTKSIKNYISRQGGDVTVNYNLEIDMEGDGELKININVKVKVEGNASIEKSKVTLEDIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:29)
Show buried residues

Minimal score value
-4.3235
Maximal score value
1.0118
Average score
-1.6075
Total score value
-178.4343

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.1209
2 D A -3.3316
3 A A -2.4825
4 E A -2.8480
5 V A -1.8819
6 E A -2.9376
7 E A -2.0800
8 N A -2.5475
9 V A 0.0000
10 N A -2.5980
11 I A 0.0000
12 D A -3.3441
13 I A 0.0000
14 K A -3.3996
15 G A -3.0081
16 S A -2.6280
17 E A -2.7276
18 K A -2.6724
19 K A -2.4278
20 K A -1.8948
21 L A 0.0000
22 N A -0.8321
23 I A 0.0000
24 E A -1.4623
25 I A 0.0000
26 K A -2.3385
27 V A 0.0000
28 K A -2.9714
29 A A 0.0000
30 A A -1.8322
31 N A -2.0627
32 G A -1.4777
33 A A -1.7777
34 S A -1.1819
35 I A -0.6329
36 T A -0.5874
37 I A -0.1119
38 E A -1.2827
39 I A -0.8822
40 N A -1.7427
41 T A -0.8493
42 T A -0.7424
43 I A 0.2521
44 D A -2.0063
45 T A -1.7967
46 T A -2.8288
47 K A -3.8463
48 K A -4.3235
49 D A -4.2171
50 Q A -3.9460
51 K A -3.3446
52 L A -1.7047
53 T A -1.1824
54 T A -0.9788
55 K A -1.4129
56 S A -0.6603
57 I A 0.4792
58 K A -0.8362
59 N A -0.5414
60 Y A 0.6648
61 I A 1.0118
62 S A -0.6501
63 R A -2.6359
64 Q A -2.6925
65 G A -2.2535
66 G A -2.2247
67 D A -2.6175
68 V A 0.0000
69 T A 0.0000
70 V A 0.0000
71 N A -0.4408
72 Y A -0.0559
73 N A -0.7750
74 L A 0.0000
75 E A -1.5669
76 I A 0.0000
77 D A -2.0613
78 M A 0.0000
79 E A -3.5296
80 G A -3.7234
81 D A -4.2738
82 G A 0.0000
83 E A -3.5081
84 L A 0.0000
85 K A -2.8117
86 I A 0.0000
87 N A -2.6094
88 I A 0.0000
89 N A -2.2734
90 V A 0.0000
91 K A -2.2206
92 V A 0.0000
93 K A -2.1094
94 V A 0.0000
95 E A -2.7225
96 G A -2.3625
97 N A -2.7849
98 A A -2.6525
99 S A -1.9661
100 I A -1.7121
101 E A -2.6273
102 K A -2.5667
103 S A -2.0271
104 K A -1.9931
105 V A -0.6164
106 T A -0.3433
107 L A -0.5337
108 E A -2.3499
109 D A -3.0234
110 I A -1.9806
111 K A -2.2222
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Laboratory of Theory of Biopolymers 2018