| Chain sequence(s) |
A: FFGHKFG
C: FFGHKFG B: FFGHKFG E: FFGHKFG D: FFGHKFG G: FFGHKFG F: FFGHKFG I: FFGHKFG H: FFGHKFG K: FFGHKFG J: FFGHKFG M: FFGHKFG L: FFGHKFG O: FFGHKFG N: FFGHKFG Q: FFGHKFG P: FFGHKFG S: FFGHKFG R: FFGHKFG T: FFGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:09)
[INFO] Main: Simulation completed successfully. (00:07:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.4964 | |
| 2 | F | A | 2.2305 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.5810 | |
| 6 | F | A | -0.2958 | |
| 7 | G | A | -0.9190 | |
| 1 | F | B | 2.6729 | |
| 2 | F | B | 2.6879 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -0.2812 | |
| 6 | F | B | -0.0886 | |
| 7 | G | B | -0.4505 | |
| 1 | F | C | 3.7107 | |
| 2 | F | C | 3.7371 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.7661 | |
| 5 | K | C | 0.0740 | |
| 6 | F | C | 0.1569 | |
| 7 | G | C | -0.3570 | |
| 1 | F | D | 3.1470 | |
| 2 | F | D | 3.2210 | |
| 3 | G | D | 1.1545 | |
| 4 | H | D | -0.0178 | |
| 5 | K | D | 0.0024 | |
| 6 | F | D | 0.9634 | |
| 7 | G | D | -0.0213 | |
| 1 | F | E | 3.8821 | |
| 2 | F | E | 3.3787 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | 0.0225 | |
| 6 | F | E | -0.1918 | |
| 7 | G | E | -0.6693 | |
| 1 | F | F | 2.8666 | |
| 2 | F | F | 2.5643 | |
| 3 | G | F | 0.0000 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -0.3290 | |
| 6 | F | F | -0.3156 | |
| 7 | G | F | -0.8918 | |
| 1 | F | G | 2.0434 | |
| 2 | F | G | 1.9946 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -0.3969 | |
| 6 | F | G | -0.3886 | |
| 7 | G | G | -0.8789 | |
| 1 | F | H | 2.0656 | |
| 2 | F | H | 2.0599 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -0.4277 | |
| 6 | F | H | -0.4139 | |
| 7 | G | H | -0.9220 | |
| 1 | F | I | 1.8994 | |
| 2 | F | I | 1.9249 | |
| 3 | G | I | 0.0000 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -0.5235 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -0.9673 | |
| 1 | F | J | 2.2760 | |
| 2 | F | J | 2.2444 | |
| 3 | G | J | 0.0000 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.5903 | |
| 6 | F | J | -0.3973 | |
| 7 | G | J | -0.9314 | |
| 1 | F | K | 2.4197 | |
| 2 | F | K | 2.5169 | |
| 3 | G | K | 0.0000 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -0.5308 | |
| 6 | F | K | -0.5750 | |
| 7 | G | K | -0.8858 | |
| 1 | F | L | 2.9458 | |
| 2 | F | L | 2.6318 | |
| 3 | G | L | 1.2960 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -0.9010 | |
| 6 | F | L | -0.4691 | |
| 7 | G | L | -0.7077 | |
| 1 | F | M | 3.0468 | |
| 2 | F | M | 2.8953 | |
| 3 | G | M | 0.8403 | |
| 4 | H | M | 0.1403 | |
| 5 | K | M | -0.1984 | |
| 6 | F | M | 0.9519 | |
| 7 | G | M | -0.0354 | |
| 1 | F | N | 2.4742 | |
| 2 | F | N | 2.5065 | |
| 3 | G | N | 0.0000 | |
| 4 | H | N | 0.3339 | |
| 5 | K | N | -0.2440 | |
| 6 | F | N | 0.0060 | |
| 7 | G | N | -0.4534 | |
| 1 | F | O | 2.2829 | |
| 2 | F | O | 2.3101 | |
| 3 | G | O | 0.0000 | |
| 4 | H | O | 0.0000 | |
| 5 | K | O | -0.4359 | |
| 6 | F | O | -0.1558 | |
| 7 | G | O | -0.8204 | |
| 1 | F | P | 2.1747 | |
| 2 | F | P | 2.0522 | |
| 3 | G | P | 0.0000 | |
| 4 | H | P | 0.0000 | |
| 5 | K | P | -0.2576 | |
| 6 | F | P | -0.3791 | |
| 7 | G | P | -0.8302 | |
| 1 | F | Q | 2.1646 | |
| 2 | F | Q | 2.0842 | |
| 3 | G | Q | 0.0000 | |
| 4 | H | Q | 0.0000 | |
| 5 | K | Q | -0.2639 | |
| 6 | F | Q | -0.4151 | |
| 7 | G | Q | -0.8490 | |
| 1 | F | R | 2.1587 | |
| 2 | F | R | 2.1078 | |
| 3 | G | R | 0.0000 | |
| 4 | H | R | 0.0000 | |
| 5 | K | R | -0.2889 | |
| 6 | F | R | -0.3876 | |
| 7 | G | R | -0.8638 | |
| 1 | F | S | 2.1366 | |
| 2 | F | S | 1.9909 | |
| 3 | G | S | 0.0000 | |
| 4 | H | S | 0.0000 | |
| 5 | K | S | -0.3875 | |
| 6 | F | S | -0.4146 | |
| 7 | G | S | -0.8706 | |
| 1 | F | T | 1.9249 | |
| 2 | F | T | 1.9991 | |
| 3 | G | T | 0.0000 | |
| 4 | H | T | 0.0000 | |
| 5 | K | T | -0.4775 | |
| 6 | F | T | -0.4724 | |
| 7 | G | T | -0.9222 |