Project name: 12073916ab8f1

Status: done

Started: 2026-05-21 14:26:58
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Chain sequence(s) A: FFGHKFG
C: FFGHKFG
B: FFGHKFG
E: FFGHKFG
D: FFGHKFG
G: FFGHKFG
F: FFGHKFG
I: FFGHKFG
H: FFGHKFG
K: FFGHKFG
J: FFGHKFG
M: FFGHKFG
L: FFGHKFG
O: FFGHKFG
N: FFGHKFG
Q: FFGHKFG
P: FFGHKFG
S: FFGHKFG
R: FFGHKFG
T: FFGHKFG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:13)
Show buried residues

Minimal score value
-0.9673
Maximal score value
3.8821
Average score
0.5707
Total score value
79.8951

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 2.4964
2 F A 2.2305
3 G A 0.0000
4 H A 0.0000
5 K A -0.5810
6 F A -0.2958
7 G A -0.9190
1 F B 2.6729
2 F B 2.6879
3 G B 0.0000
4 H B 0.0000
5 K B -0.2812
6 F B -0.0886
7 G B -0.4505
1 F C 3.7107
2 F C 3.7371
3 G C 0.0000
4 H C 0.7661
5 K C 0.0740
6 F C 0.1569
7 G C -0.3570
1 F D 3.1470
2 F D 3.2210
3 G D 1.1545
4 H D -0.0178
5 K D 0.0024
6 F D 0.9634
7 G D -0.0213
1 F E 3.8821
2 F E 3.3787
3 G E 0.0000
4 H E 0.0000
5 K E 0.0225
6 F E -0.1918
7 G E -0.6693
1 F F 2.8666
2 F F 2.5643
3 G F 0.0000
4 H F 0.0000
5 K F -0.3290
6 F F -0.3156
7 G F -0.8918
1 F G 2.0434
2 F G 1.9946
3 G G 0.0000
4 H G 0.0000
5 K G -0.3969
6 F G -0.3886
7 G G -0.8789
1 F H 2.0656
2 F H 2.0599
3 G H 0.0000
4 H H 0.0000
5 K H -0.4277
6 F H -0.4139
7 G H -0.9220
1 F I 1.8994
2 F I 1.9249
3 G I 0.0000
4 H I 0.0000
5 K I -0.5235
6 F I 0.0000
7 G I -0.9673
1 F J 2.2760
2 F J 2.2444
3 G J 0.0000
4 H J 0.0000
5 K J -0.5903
6 F J -0.3973
7 G J -0.9314
1 F K 2.4197
2 F K 2.5169
3 G K 0.0000
4 H K 0.0000
5 K K -0.5308
6 F K -0.5750
7 G K -0.8858
1 F L 2.9458
2 F L 2.6318
3 G L 1.2960
4 H L 0.0000
5 K L -0.9010
6 F L -0.4691
7 G L -0.7077
1 F M 3.0468
2 F M 2.8953
3 G M 0.8403
4 H M 0.1403
5 K M -0.1984
6 F M 0.9519
7 G M -0.0354
1 F N 2.4742
2 F N 2.5065
3 G N 0.0000
4 H N 0.3339
5 K N -0.2440
6 F N 0.0060
7 G N -0.4534
1 F O 2.2829
2 F O 2.3101
3 G O 0.0000
4 H O 0.0000
5 K O -0.4359
6 F O -0.1558
7 G O -0.8204
1 F P 2.1747
2 F P 2.0522
3 G P 0.0000
4 H P 0.0000
5 K P -0.2576
6 F P -0.3791
7 G P -0.8302
1 F Q 2.1646
2 F Q 2.0842
3 G Q 0.0000
4 H Q 0.0000
5 K Q -0.2639
6 F Q -0.4151
7 G Q -0.8490
1 F R 2.1587
2 F R 2.1078
3 G R 0.0000
4 H R 0.0000
5 K R -0.2889
6 F R -0.3876
7 G R -0.8638
1 F S 2.1366
2 F S 1.9909
3 G S 0.0000
4 H S 0.0000
5 K S -0.3875
6 F S -0.4146
7 G S -0.8706
1 F T 1.9249
2 F T 1.9991
3 G T 0.0000
4 H T 0.0000
5 K T -0.4775
6 F T -0.4724
7 G T -0.9222
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Laboratory of Theory of Biopolymers 2018